Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra027355.1-P | Field mustard | nucleus | 87.59 | 98.68 |
| CDX98435 | Canola | nucleus | 83.37 | 93.93 |
| CDX75756 | Canola | nucleus | 64.4 | 79.02 |
| CDX82492 | Canola | nucleus | 64.64 | 78.41 |
| CDY39107 | Canola | nucleus | 70.96 | 77.69 |
| CDY65334 | Canola | nucleus | 69.56 | 77.55 |
| AT3G14230.1 | Thale cress | nucleus | 66.98 | 75.46 |
| CDY25681 | Canola | nucleus | 48.71 | 67.75 |
| CDY02492 | Canola | nucleus | 48.48 | 67.65 |
| TraesCS5D01G320800.1 | Wheat | nucleus | 20.61 | 44.44 |
| TraesCS5A01G314600.1 | Wheat | nucleus | 20.84 | 43.63 |
| TraesCS5B01G315500.2 | Wheat | nucleus | 20.84 | 42.38 |
| Os01t0313300-01 | Rice | nucleus | 20.37 | 42.03 |
| CDY27480 | Canola | nucleus | 18.97 | 41.97 |
| CDY51428 | Canola | nucleus | 19.2 | 41.84 |
| CDX68269 | Canola | nucleus | 20.84 | 40.27 |
| CDX72909 | Canola | nucleus | 17.56 | 39.89 |
| EES00666 | Sorghum | nucleus | 20.61 | 38.77 |
| Zm00001d009103_P001 | Maize | nucleus | 20.61 | 38.26 |
| Zm00001d040651_P001 | Maize | nucleus | 20.84 | 37.55 |
| CDY50643 | Canola | nucleus | 19.91 | 37.44 |
| CDY34977 | Canola | nucleus | 19.67 | 34.85 |
| CDX95906 | Canola | nucleus | 19.91 | 34.84 |
| CDX92094 | Canola | nucleus | 19.67 | 34.71 |
| CDY54628 | Canola | nucleus | 19.67 | 34.29 |
| CDY28337 | Canola | nucleus | 19.44 | 34.16 |
| CDX82392 | Canola | nucleus | 19.44 | 33.88 |
| CDY37698 | Canola | mitochondrion | 13.35 | 33.73 |
| CDX96402 | Canola | nucleus | 19.67 | 33.6 |
| HORVU5Hr1G080790.1 | Barley | nucleus | 20.61 | 29.43 |
| CDY53788 | Canola | golgi | 13.11 | 28.57 |
| CDY17191 | Canola | nucleus | 14.05 | 27.78 |
| CDY27952 | Canola | nucleus | 14.05 | 27.78 |
| Zm00001d007033_P001 | Maize | plastid | 16.63 | 25.0 |
| CDX69647 | Canola | nucleus | 11.94 | 23.5 |
| CDY14051 | Canola | nucleus | 14.05 | 23.44 |
| CDX98982 | Canola | nucleus | 13.82 | 23.32 |
| CDX70027 | Canola | nucleus | 13.82 | 23.32 |
| CDY55173 | Canola | nucleus | 13.82 | 23.14 |
| CDY53152 | Canola | nucleus | 12.18 | 23.01 |
| CDY09787 | Canola | nucleus | 11.94 | 22.87 |
| CDX78288 | Canola | nucleus | 13.58 | 22.75 |
| CDX78517 | Canola | nucleus | 13.11 | 21.71 |
| CDX70498 | Canola | nucleus | 13.11 | 21.71 |
| CDX85656 | Canola | nucleus | 12.65 | 21.69 |
| CDX91131 | Canola | nucleus | 12.65 | 21.26 |
| CDX75430 | Canola | nucleus | 12.88 | 20.99 |
| CDX76278 | Canola | nucleus | 12.88 | 20.75 |
| CDY31304 | Canola | nucleus | 18.5 | 20.73 |
| CDY46821 | Canola | nucleus | 18.5 | 20.68 |
| CDY45310 | Canola | nucleus | 12.41 | 20.31 |
| CDY46253 | Canola | nucleus | 12.41 | 20.31 |
| CDY14506 | Canola | nucleus | 18.5 | 20.15 |
| CDX69054 | Canola | nucleus | 12.41 | 20.08 |
| CDX72481 | Canola | nucleus | 11.94 | 19.77 |
| CDY08853 | Canola | nucleus | 18.03 | 19.49 |
| CDX81250 | Canola | nucleus | 17.1 | 18.11 |
| CDX69056 | Canola | nucleus | 8.43 | 17.65 |
| CDY71587 | Canola | cytosol | 0.47 | 2.9 |
Protein Annotations
| MapMan:15.5.7.1 | Gene3D:3.30.730.10 | GO:A0A078EA14 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | EnsemblPlants:CDX97559 |
| ProteinID:CDX97559 | ProteinID:CDX97559.1 | InterPro:DNA-bd_dom_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00104771001 | InterPro:IPR001471 | InterPro:IPR036955 | PFAM:PF00847 |
| PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31190 | PANTHER:PTHR31190:SF66 | SMART:SM00380 | SUPFAM:SSF54171 |
| UniParc:UPI0004EF360D | SEG:seg | : | : | : | : |
Description
BnaA05g25200D
Coordinates
chrLK031900:-:303333..307209
Molecular Weight (calculated)
46971.3 Da
IEP (calculated)
4.518
GRAVY (calculated)
-0.630
Length
427 amino acids
Sequence
(BLAST)
(BLAST)
001: MCGGAIISEF IPPSRSRRVT SEHLWPDLKN KGKASKKKRS GFIDLDDEFE ADFQGFKDDA SFDCEDEFDV DDDVFADVKP FVFAAGAKPV ASPPAALAST
101: DDAVLFMCSV SGKKTIESGG QAEKSAKRKR KNQYRGIRQR PWGKWAAEIR DPRKGSREWL GTFDTAEEAA RAYDAAARRI RGNKAKVNFP EEMVPSVSQK
201: RPAAKKAVAK PNQSPASVQQ PTHVSQYCNN SFDNMGHDSS FGDVSFMEEK PQMCNNQFFD VGGNNGYQYF SSDQGSNSLD CSEFGWSDQT PKTPEISSML
301: VNNNQAPFIE ETNPAKKLKT SSEDGTSNND SSDDLMAYLN NALWESPLEV EAMFGGDAAT MTQEEGNPMD LWSLDDINSM LDGGGFAVGG GMVQEFLQFN
401: FGGNCPETSD IISLHFFLAR FDLLSSI
101: DDAVLFMCSV SGKKTIESGG QAEKSAKRKR KNQYRGIRQR PWGKWAAEIR DPRKGSREWL GTFDTAEEAA RAYDAAARRI RGNKAKVNFP EEMVPSVSQK
201: RPAAKKAVAK PNQSPASVQQ PTHVSQYCNN SFDNMGHDSS FGDVSFMEEK PQMCNNQFFD VGGNNGYQYF SSDQGSNSLD CSEFGWSDQT PKTPEISSML
301: VNNNQAPFIE ETNPAKKLKT SSEDGTSNND SSDDLMAYLN NALWESPLEV EAMFGGDAAT MTQEEGNPMD LWSLDDINSM LDGGGFAVGG GMVQEFLQFN
401: FGGNCPETSD IISLHFFLAR FDLLSSI
001: MCGGAIISDF IPPPRSLRVT NEFIWPDLKN KVKASKKRSN KRSDFFDLDD DFEADFQGFK DDSAFDCEDD DDVFVNVKPF VFTATTKPVA SAFVSTGIYL
101: VGSAYAKKTV ESAEQAEKSS KRKRKNQYRG IRQRPWGKWA AEIRDPRKGS REWLGTFDTA EEAARAYDAA ARRIRGTKAK VNFPEEKNPS VVSQKRPSAK
201: TNNLQKSVAK PNKSVTLVQQ PTHLSQQYCN NSFDNSFGDM SFMEEKPQMY NNQFGLTNSF DAGGNNGYQY FSSDQGSNSF DCSEFGWSDH GPKTPEISSM
301: LVNNNEASFV EETNAAKKLK PNSDESDDLM AYLDNALWDT PLEVEAMLGA DAGAVTQEEE NPVELWSLDE INFMLEGDF
101: VGSAYAKKTV ESAEQAEKSS KRKRKNQYRG IRQRPWGKWA AEIRDPRKGS REWLGTFDTA EEAARAYDAA ARRIRGTKAK VNFPEEKNPS VVSQKRPSAK
201: TNNLQKSVAK PNKSVTLVQQ PTHLSQQYCN NSFDNSFGDM SFMEEKPQMY NNQFGLTNSF DAGGNNGYQY FSSDQGSNSF DCSEFGWSDH GPKTPEISSM
301: LVNNNEASFV EETNAAKKLK PNSDESDDLM AYLDNALWDT PLEVEAMLGA DAGAVTQEEE NPVELWSLDE INFMLEGDF
Arabidopsis Description
RAP2-2Ethylene-responsive transcription factor RAP2-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUM4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.