Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 2
- mitochondrion 4
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY53788 | Canola | golgi | 96.45 | 83.16 |
| Bra021871.1-P | Field mustard | nucleus | 92.9 | 72.69 |
| CDY27952 | Canola | nucleus | 72.19 | 56.48 |
| CDY17191 | Canola | nucleus | 71.01 | 55.56 |
| AT2G33710.2 | Thale cress | nucleus | 68.05 | 49.78 |
| CDY09787 | Canola | nucleus | 39.65 | 30.04 |
| CDX69647 | Canola | nucleus | 37.87 | 29.49 |
| CDY27480 | Canola | nucleus | 31.95 | 27.98 |
| CDY51428 | Canola | nucleus | 31.95 | 27.55 |
| CDY53152 | Canola | nucleus | 36.09 | 26.99 |
| CDX98982 | Canola | nucleus | 39.05 | 26.09 |
| CDX70027 | Canola | nucleus | 39.05 | 26.09 |
| CDY14051 | Canola | nucleus | 38.46 | 25.39 |
| CDX85656 | Canola | nucleus | 37.28 | 25.3 |
| CDX72909 | Canola | nucleus | 27.81 | 25.0 |
| CDX78517 | Canola | nucleus | 37.87 | 24.81 |
| CDX70498 | Canola | nucleus | 37.87 | 24.81 |
| CDY55173 | Canola | nucleus | 37.28 | 24.71 |
| CDX91131 | Canola | nucleus | 36.69 | 24.41 |
| CDX78288 | Canola | nucleus | 36.09 | 23.92 |
| CDY34977 | Canola | nucleus | 31.36 | 21.99 |
| CDX95906 | Canola | nucleus | 31.36 | 21.72 |
| CDX92094 | Canola | nucleus | 30.77 | 21.49 |
| CDY28337 | Canola | nucleus | 30.77 | 21.4 |
| CDX68269 | Canola | nucleus | 27.81 | 21.27 |
| CDX82392 | Canola | nucleus | 30.18 | 20.82 |
| CDY54628 | Canola | nucleus | 30.18 | 20.82 |
| CDY50643 | Canola | nucleus | 27.81 | 20.7 |
| CDY46253 | Canola | nucleus | 31.95 | 20.69 |
| CDX72481 | Canola | nucleus | 31.36 | 20.54 |
| CDX76278 | Canola | nucleus | 31.95 | 20.38 |
| CDY45310 | Canola | nucleus | 31.36 | 20.31 |
| CDX69054 | Canola | nucleus | 31.36 | 20.08 |
| CDX75430 | Canola | nucleus | 30.77 | 19.85 |
| CDX69056 | Canola | nucleus | 23.08 | 19.12 |
| CDX96402 | Canola | nucleus | 27.81 | 18.8 |
| CDY31304 | Canola | nucleus | 36.09 | 16.01 |
| CDX82492 | Canola | nucleus | 33.14 | 15.91 |
| CDX75756 | Canola | nucleus | 32.54 | 15.8 |
| CDY46821 | Canola | nucleus | 35.5 | 15.71 |
| CDX81250 | Canola | nucleus | 37.28 | 15.63 |
| CDY14506 | Canola | nucleus | 35.5 | 15.31 |
| CDY08853 | Canola | nucleus | 35.5 | 15.19 |
| CDX98435 | Canola | nucleus | 33.73 | 15.04 |
| CDY02492 | Canola | nucleus | 26.63 | 14.71 |
| CDY65334 | Canola | nucleus | 33.14 | 14.62 |
| CDY39107 | Canola | nucleus | 33.14 | 14.36 |
| CDY25681 | Canola | nucleus | 26.04 | 14.33 |
| CDX97559 | Canola | nucleus | 33.73 | 13.35 |
| CDY71587 | Canola | cytosol | 0.59 | 1.45 |
Protein Annotations
| MapMan:15.5.7.1 | Gene3D:3.30.730.10 | GO:A0A078HLG8 | UniProt:A0A078HLG8 | InterPro:AP2/ERF-transcript_factor | InterPro:AP2/ERF_dom |
| InterPro:AP2/ERF_dom_sf | EnsemblPlants:CDY37698 | ProteinID:CDY37698 | ProteinID:CDY37698.1 | InterPro:DNA-bd_dom_sf | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00064592001 | InterPro:IPR001471 | InterPro:IPR036955 |
| PFAM:PF00847 | PIRSF:PIRSF038123 | PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31190 | PANTHER:PTHR31190:SF41 |
| SMART:SM00380 | SUPFAM:SSF54171 | UniParc:UPI0004EE1E55 | SEG:seg | : | : |
Description
BnaA04g19700DBnaA04g19700D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HLG8]
Coordinates
chrLK032406:+:121679..122860
Molecular Weight (calculated)
19265.1 Da
IEP (calculated)
10.520
GRAVY (calculated)
-0.582
Length
169 amino acids
Sequence
(BLAST)
(BLAST)
001: MTLIKWIIHI LKIKQRKSRQ RNYRGVRQRP WGKYAAEIRD PNKAARVWLG TFNTAEEAAL AYDKAAFEFR GHKAKLNFPE HILINSSTHR YPSTATSHDP
101: IIVTPVPPVA PDILLDQYGK YLSENSYSST AILSMTISAS SSSLSQQENI PKLEDSESVK NMSIHKRRK
101: IIVTPVPPVA PDILLDQYGK YLSENSYSST AILSMTISAS SSSLSQQENI PKLEDSESVK NMSIHKRRK
001: MHSGKRPLSP ESMAGNREEK KELCCCSTLS ESDVSDFVSE LTGQPIPSSI DDQSSSLTLQ EKSNSRQRNY RGVRQRPWGK WAAEIRDPNK AARVWLGTFD
101: TAEEAALAYD KAAFEFRGHK AKLNFPEHIR VNPTQLYPSP ATSHDRIIVT PPSPPPPIAP DILLDQYGHF QSRSSDSSAN LSMNMLSSSS SSLNHQGLRP
201: NLEDGENVKN ISIHKRRK
101: TAEEAALAYD KAAFEFRGHK AKLNFPEHIR VNPTQLYPSP ATSHDRIIVT PPSPPPPIAP DILLDQYGHF QSRSSDSSAN LSMNMLSSSS SSLNHQGLRP
201: NLEDGENVKN ISIHKRRK
Arabidopsis Description
Integrase-type DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IFX1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.