CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	plastid
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX68269	Canola	nucleus	87.67	90.05
Bra003883.1-P	Field mustard	nucleus	94.27	88.07
CDX72909	Canola	nucleus	56.83	68.62
CDX96402	Canola	nucleus	63.44	57.6
AT1G72360.2	Thale cress	nucleus	60.79	52.67
CDY27480	Canola	nucleus	33.92	39.9
CDY51428	Canola	nucleus	33.48	38.78
CDY54628	Canola	nucleus	31.72	29.39
CDX82392	Canola	nucleus	31.72	29.39
CDX92094	Canola	nucleus	30.4	28.51
CDY28337	Canola	nucleus	30.4	28.4
CDX95906	Canola	nucleus	30.4	28.28
CDY34977	Canola	nucleus	29.96	28.22
CDY37698	Canola	mitochondrion	20.7	27.81
CDY53788	Canola	golgi	20.7	23.98
CDY02492	Canola	nucleus	31.72	23.53
CDY25681	Canola	nucleus	31.72	23.45
CDX82492	Canola	nucleus	35.68	23.01
CDX75756	Canola	nucleus	35.24	22.99
CDX98435	Canola	nucleus	37.44	22.43
CDX69647	Canola	nucleus	21.15	22.12
CDY27952	Canola	nucleus	20.7	21.76
CDY17191	Canola	nucleus	20.7	21.76
CDY09787	Canola	nucleus	21.15	21.52
CDY65334	Canola	nucleus	36.12	21.41
CDY39107	Canola	nucleus	36.56	21.28
CDY53152	Canola	nucleus	20.26	20.35
CDX97559	Canola	nucleus	37.44	19.91
CDX78517	Canola	nucleus	22.47	19.77
CDX85656	Canola	nucleus	21.59	19.68
CDY55173	Canola	nucleus	22.03	19.61
CDX70498	Canola	nucleus	22.03	19.38
CDX91131	Canola	nucleus	21.59	19.29
CDY14051	Canola	nucleus	21.59	19.14
CDX98982	Canola	nucleus	21.15	18.97
CDX70027	Canola	nucleus	21.15	18.97
CDX78288	Canola	nucleus	21.15	18.82
CDY45310	Canola	nucleus	21.15	18.39
CDX72481	Canola	nucleus	20.7	18.22
CDY46253	Canola	nucleus	20.7	18.01
CDX69054	Canola	nucleus	20.7	17.8
CDX76278	Canola	nucleus	20.7	17.74
CDX69056	Canola	nucleus	15.86	17.65
CDX75430	Canola	nucleus	20.26	17.56
CDY31304	Canola	nucleus	25.55	15.22
CDY46821	Canola	nucleus	25.55	15.18
CDY14506	Canola	nucleus	24.67	14.29
CDY08853	Canola	nucleus	24.23	13.92
CDX81250	Canola	nucleus	24.23	13.65
CDY71587	Canola	cytosol	0.0	0.0

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	GO:A0A078INJ4	UniProt:A0A078INJ4	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
EnsemblPlants:CDY50643	ProteinID:CDY50643	ProteinID:CDY50643.1	InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00097198001	InterPro:IPR001471	InterPro:IPR036955	PFAM:PF00847
PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31190	PANTHER:PTHR31190:SF66	SMART:SM00380	SUPFAM:SSF54171
UniParc:UPI0004EF44E8	SEG:seg	:	:	:	:

Description

BnaC06g24360DBnaC06g24360D protein [Source:UniProtKB/TrEMBL;Acc:A0A078INJ4]

Coordinates

chrLK032928:-:83260..84030

Molecular Weight (calculated)

25494.8 Da

IEP (calculated)

8.617

GRAVY (calculated)

-0.874

Length

227 amino acids

Sequence
(BLAST)

001: MCGGAVIADY ITPSRSRRSS KSTWRRDDVP AAPLRRSSPP QEDRRKKKKK SSEYRGIRRR PWGRWAAEIR DPIKGVRVWL GTFNTAEDAA RAYDLEAKRI
101: RGAKAKLNFP NESPSRKRKA SSSSSSSSPQ PQVKIEEKQE VAVASSMWEG DTIQVDTQWL EDAIKGGEEE GKKQKGCDGE ADVNALLSEE LLAFEKETEC
201: FFQMPFMEGG NCVSSVFEGD DVLDLWS

Best Arabidopsis Sequence Match ( AT1G72360.3 )
(BLAST)

001: MCGGAVISDY IAPEKIARSS GKSSWRSNGV FDCSIYDFDG NFDELESDEP FVFSSTHKHH ASASDGKKKQ SSRYKGIRRR PWGRWAAEIR DPIKGVRVWL
101: GTFNTAEEAA RAYDLEAKRI RGAKAKLNFP NESSGKRKAK AKTVQQVEEN HEADLDVAVV SSAPSSSCLD FLWEENNPDT LLIDTQWLED IIMGDANKKH
201: EPNDSEEANN VDASLLSEEL LAFENQTEYF SQMPFTEGNC DSSTSLSSLF DGGNDMGLWS

Arabidopsis Description

HRE1Integrase-type DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IDA7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.