CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra037794.1-P	Field mustard	nucleus	88.34	93.44
CDY31304	Canola	nucleus	72.7	76.9
CDY46821	Canola	nucleus	72.46	76.44
CDY14506	Canola	nucleus	73.7	75.77
AT5G64750.1	Thale cress	nucleus	73.45	75.7
CDY08853	Canola	nucleus	73.45	74.94
CDY37698	Canola	mitochondrion	15.63	37.28
KRH64120	Soybean	nucleus	24.81	35.59
Solyc04g051360.2.1	Tomato	nucleus	25.81	34.32
GSMUA_Achr6P18020_001	Banana	nucleus	22.33	33.96
CDY53152	Canola	nucleus	18.61	33.19
CDY51428	Canola	nucleus	16.13	33.16
CDY27480	Canola	nucleus	15.88	33.16
KRH53825	Soybean	nucleus	26.05	32.61
CDY53788	Canola	golgi	15.63	32.14
CDY17191	Canola	nucleus	17.12	31.94
CDY27952	Canola	nucleus	17.12	31.94
CDY14051	Canola	nucleus	20.1	31.64
VIT_07s0031g01980.t01	Wine grape	nucleus	27.3	31.25
CDX70027	Canola	nucleus	19.6	31.23
CDX98982	Canola	nucleus	19.6	31.23
CDY55173	Canola	nucleus	19.6	30.98
CDX78288	Canola	nucleus	18.86	29.8
HORVU5Hr1G036590.2	Barley	nucleus	23.08	29.62
TraesCS5A01G112600.1	Wheat	nucleus	24.07	29.57
CDX69647	Canola	nucleus	15.88	29.49
TraesCS5D01G129400.1	Wheat	nucleus	23.33	28.75
CDY09787	Canola	nucleus	15.88	28.7
KRH43369	Soybean	nucleus	20.84	28.38
CDX78517	Canola	nucleus	18.11	28.29
CDX72909	Canola	nucleus	13.15	28.19
CDX70498	Canola	nucleus	17.87	27.91
TraesCS5B01G118200.1	Wheat	nucleus	23.57	27.86
CDX75430	Canola	nucleus	17.87	27.48
CDX85656	Canola	nucleus	16.87	27.31
CDX69054	Canola	nucleus	17.87	27.27
PGSC0003DMT400050718	Potato	nucleus	26.55	27.02
KRH59504	Soybean	nucleus	23.08	26.96
CDY46253	Canola	nucleus	17.37	26.82
CDX76278	Canola	nucleus	17.62	26.79
CDX91131	Canola	nucleus	16.63	26.38
CDY45310	Canola	nucleus	16.87	26.05
CDX72481	Canola	nucleus	16.63	25.97
CDX69056	Canola	nucleus	12.66	25.0
CDY34977	Canola	nucleus	14.89	24.9
CDY54628	Canola	nucleus	14.89	24.49
CDX82392	Canola	nucleus	14.89	24.49
CDX68269	Canola	nucleus	13.4	24.43
CDY28337	Canola	nucleus	14.64	24.28
CDY50643	Canola	nucleus	13.65	24.23
Zm00001d053195_P002	Maize	nucleus	19.6	24.01
OQU82952	Sorghum	mitochondrion	19.6	24.01
CDX92094	Canola	nucleus	14.39	23.97
CDX95906	Canola	nucleus	14.39	23.77
OQU78803	Sorghum	nucleus	19.11	22.58
CDX96402	Canola	nucleus	13.15	21.2
Zm00001d023535_P001	Maize	nucleus	21.59	20.57
Os12t0168100-01	Rice	nucleus	17.37	20.53
CDX82492	Canola	nucleus	17.87	20.45
CDX75756	Canola	nucleus	17.62	20.4
CDY02492	Canola	nucleus	15.14	19.93
CDY25681	Canola	nucleus	15.14	19.87
CDY65334	Canola	nucleus	18.11	19.06
CDX98435	Canola	nucleus	17.87	19.0
CDY39107	Canola	nucleus	18.11	18.72
CDX97559	Canola	nucleus	18.11	17.1
CDY71587	Canola	cytosol	1.74	10.14

Protein Annotations

MapMan:15.5.7.1	MapMan:15.5.7.2	Gene3D:3.30.730.10	GO:A0A078CWJ7	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
EnsemblPlants:CDX81250	ProteinID:CDX81250	ProteinID:CDX81250.1	InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00134741001	InterPro:IPR001471	InterPro:IPR036955
PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31190	PANTHER:PTHR31190:SF66	SMART:SM00380
SUPFAM:SSF54171	UniParc:UPI0004EEFF89	SEG:seg	:	:	:

Description

BnaC09g06610D

Coordinates

chrLK031824:+:413348..416236

Molecular Weight (calculated)

44272.7 Da

IEP (calculated)

7.471

GRAVY (calculated)

-0.889

Length

403 amino acids

Sequence
(BLAST)

001: MIKRNRENPG DGREDDGENC VCALKVANQE DNVGKKAEPT TREDDDHRTL SDIDQWLYSF SAEDDHLHRH NSLTPPSSSL SISREKEMSA IVSALTHVVA
101: GNVPTRQYGG EGTSNSSSSP GQKRRREVEE GGGGGKDVKA ANTLTVDQYF SGGSSSSKVG EASSNMSGSV PTYEYTTTPN VNTETLLLSG DGPQRRYRGV
201: RQRPWGKWAA EIRDPFKAAR VWLGTFDNAE SAARAYDEAA LRFRGNKAKL NFPENVKLVR PASIAPTLSV HQTTVQRPTQ LRNSGSTSTL LPVRHASDQN
301: VHSQLLMQSY NFSHLELAHH QQQFQHQQQS LYDQVSFPLR FGHTGGSTMQ PTSTSSSRST SMFSPAEVQP KLESASETDR LQDLQSLGKA SNNNNNYNNS
401: PSS

Best Arabidopsis Sequence Match ( AT5G64750.1 )
(BLAST)

001: MCVLKVANQE DNVGKKAESI RDDDHRTLSE IDQWLYLFAA EDDHHRHSFP TQQPPPSSSS SSLISGFSRE MEMSAIVSAL THVVAGNVPQ HQQGGGEGSG
101: EGTSNSSSSS GQKRRREVEE GGAKAVKAAN TLTVDQYFSG GSSTSKVREA SSNMSGPGPT YEYTTTATAS SETSSFSGDQ PRRRYRGVRQ RPWGKWAAEI
201: RDPFKAARVW LGTFDNAESA ARAYDEAALR FRGNKAKLNF PENVKLVRPA STEAQPVHQT AAQRPTQSRN SGSTTTLLPI RPASNQSVHS QPLMQSYNLS
301: YSEMARQQQQ FQQHHQQSLD LYDQMSFPLR FGHTGGSMMQ STSSSSSHSR PLFSPAAVQP PPESASETGY LQDIQWPSDK TSNNYNNSPS S

Arabidopsis Description

ABR1Ethylene-responsive transcription factor ABR1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FGF8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.