Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G129400.1 | Wheat | nucleus | 91.79 | 95.72 |
| TraesCS5A01G112600.1 | Wheat | nucleus | 90.03 | 93.6 |
| HORVU5Hr1G036590.2 | Barley | nucleus | 78.01 | 84.71 |
| TraesCS6B01G350100.1 | Wheat | nucleus | 18.77 | 34.22 |
| GSMUA_Achr6P18020_001 | Banana | nucleus | 25.81 | 33.21 |
| TraesCS6B01G350000.1 | Wheat | nucleus | 18.18 | 32.98 |
| TraesCS1B01G243200.1 | Wheat | nucleus | 17.89 | 32.97 |
| TraesCS7B01G162100.1 | Wheat | plastid | 21.41 | 32.59 |
| TraesCS2B01G304800.1 | Wheat | nucleus | 22.58 | 30.43 |
| Zm00001d053195_P002 | Maize | nucleus | 28.74 | 29.79 |
| KRH64120 | Soybean | nucleus | 24.05 | 29.18 |
| TraesCS6B01G350400.1 | Wheat | nucleus | 21.41 | 28.85 |
| TraesCS1B01G389900.1 | Wheat | nucleus | 22.58 | 28.84 |
| TraesCS5B01G315500.2 | Wheat | nucleus | 17.6 | 28.57 |
| TraesCS5B01G236900.1 | Wheat | nucleus | 20.23 | 28.51 |
| OQU78803 | Sorghum | nucleus | 28.45 | 28.45 |
| Solyc04g051360.2.1 | Tomato | nucleus | 24.93 | 28.05 |
| TraesCS1B01G389700.1 | Wheat | nucleus | 20.53 | 27.89 |
| KRH43369 | Soybean | nucleus | 24.05 | 27.7 |
| TraesCS1B01G389800.1 | Wheat | nucleus | 20.53 | 27.03 |
| Os12t0168100-01 | Rice | nucleus | 26.39 | 26.39 |
| AT5G64750.1 | Thale cress | nucleus | 29.62 | 25.83 |
| Bra037794.1-P | Field mustard | nucleus | 28.74 | 25.72 |
| Zm00001d023535_P001 | Maize | nucleus | 31.67 | 25.53 |
| VIT_07s0031g01980.t01 | Wine grape | nucleus | 26.1 | 25.28 |
| CDY46821 | Canola | nucleus | 28.15 | 25.13 |
| Bra031903.1-P | Field mustard | nucleus | 27.86 | 25.07 |
| Bra024325.1-P | Field mustard | nucleus | 29.03 | 25.06 |
| CDY14506 | Canola | nucleus | 28.74 | 25.0 |
| CDY31304 | Canola | nucleus | 27.86 | 24.93 |
| CDY08853 | Canola | nucleus | 28.74 | 24.81 |
| KRH59504 | Soybean | nucleus | 24.93 | 24.64 |
| KRH53825 | Soybean | nucleus | 23.17 | 24.53 |
| CDX81250 | Canola | nucleus | 27.86 | 23.57 |
| PGSC0003DMT400050718 | Potato | nucleus | 26.98 | 23.23 |
| TraesCS6B01G126700.1 | Wheat | nucleus, plastid | 15.54 | 22.46 |
| TraesCS4B01G299400.1 | Wheat | nucleus | 19.06 | 20.77 |
| TraesCS4B01G299500.1 | Wheat | nucleus | 18.18 | 19.62 |
| TraesCS7B01G062200.1 | Wheat | nucleus | 16.42 | 15.77 |
| TraesCS7B01G283900.1 | Wheat | nucleus | 12.61 | 15.41 |
| TraesCS7B01G324400.1 | Wheat | nucleus | 14.08 | 15.38 |
| TraesCS6B01G126600.1 | Wheat | nucleus | 16.42 | 15.3 |
| TraesCS5B01G214400.1 | Wheat | nucleus | 17.01 | 15.03 |
| TraesCS6B01G375400.1 | Wheat | nucleus | 17.01 | 14.57 |
| TraesCS6B01G125900.1 | Wheat | nucleus | 16.13 | 14.29 |
| TraesCS7B01G278700.1 | Wheat | nucleus | 14.96 | 13.32 |
| TraesCS6B01G427100.1 | Wheat | nucleus | 12.61 | 12.99 |
Protein Annotations
| MapMan:15.5.7.1 | Gene3D:3.30.730.10 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | InterPro:DNA-bd_dom_sf | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR001471 | InterPro:IPR036955 |
| PFAM:PF00847 | PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31190 | PANTHER:PTHR31190:SF66 | SMART:SM00380 |
| SUPFAM:SSF54171 | EnsemblPlantsGene:TraesCS5B01G118200 | EnsemblPlants:TraesCS5B01G118200.1 | TIGR:cd00018 | SEG:seg | : |
Description
No Description!
Coordinates
chr5B:+:208701502..208703228
Molecular Weight (calculated)
35528.0 Da
IEP (calculated)
6.244
GRAVY (calculated)
-0.604
Length
341 amino acids
Sequence
(BLAST)
(BLAST)
001: MCCGAEVADP GEHRRRLAAG DDDGGDGREE HALSPPPLNT TMWGRRQAQE MSAMVSALAQ VVAGGVGEGV MASSTKRPAE HEAFAEEAWW STSYGGGDGD
101: GGAPSAASSF LADYTAAPAA SYSPHGAAAG DEELPSPSSA ESGGSGGTPR KRYRGVRQRP WGKWAAEIRD PHKAARVWLG TFDDAEAAAR AYDAAALGFR
201: GSRAKLNFPE SATIPPPQQP PHAPALAMPP PQQPPHAPAL AMPPPQRPEA LLESQALLGG QAYSHYARFL RPSTGGSTSG APRTPAPPLI YSFGAGASYP
301: LQPERRGEGA STERPAPVVT SAAAWAAYSH EQPQRRDDPS V
101: GGAPSAASSF LADYTAAPAA SYSPHGAAAG DEELPSPSSA ESGGSGGTPR KRYRGVRQRP WGKWAAEIRD PHKAARVWLG TFDDAEAAAR AYDAAALGFR
201: GSRAKLNFPE SATIPPPQQP PHAPALAMPP PQQPPHAPAL AMPPPQRPEA LLESQALLGG QAYSHYARFL RPSTGGSTSG APRTPAPPLI YSFGAGASYP
301: LQPERRGEGA STERPAPVVT SAAAWAAYSH EQPQRRDDPS V
001: MHSGKRPLSP ESMAGNREEK KELCCCSTLS ESDVSDFVSE LTGQPIPSSI DDQSSSLTLQ EKSNSRQRNY RGVRQRPWGK WAAEIRDPNK AARVWLGTFD
101: TAEEAALAYD KAAFEFRGHK AKLNFPEHIR VNPTQLYPSP ATSHDRIIVT PPSPPPPIAP DILLDQYGHF QSRSSDSSAN LSMNMLSSSS SSLNHQGLRP
201: NLEDGENVKN ISIHKRRK
101: TAEEAALAYD KAAFEFRGHK AKLNFPEHIR VNPTQLYPSP ATSHDRIIVT PPSPPPPIAP DILLDQYGHF QSRSSDSSAN LSMNMLSSSS SSLNHQGLRP
201: NLEDGENVKN ISIHKRRK
Arabidopsis Description
Integrase-type DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IFX1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.