Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G283900.1 | Wheat | nucleus | 50.45 | 59.86 |
| HORVU0Hr1G021820.1 | Barley | nucleus | 47.43 | 54.9 |
| TraesCS6B01G375400.1 | Wheat | nucleus | 64.05 | 53.27 |
| TraesCS7B01G324400.1 | Wheat | nucleus | 46.22 | 49.04 |
| TraesCS6B01G126600.1 | Wheat | nucleus | 53.47 | 48.36 |
| TraesCS6B01G125900.1 | Wheat | nucleus | 54.38 | 46.75 |
| HORVU7Hr1G090440.1 | Barley | nucleus | 52.57 | 46.52 |
| EES07642 | Sorghum | nucleus | 46.53 | 41.85 |
| Zm00001d052087_P001 | Maize | nucleus | 45.62 | 41.83 |
| TraesCS7B01G278700.1 | Wheat | nucleus | 47.73 | 41.25 |
| TraesCS7B01G062200.1 | Wheat | nucleus | 41.39 | 38.59 |
| TraesCS6B01G126700.1 | Wheat | nucleus, plastid | 26.89 | 37.71 |
| Zm00001d018305_P001 | Maize | nucleus | 26.89 | 31.56 |
| KRG97290 | Soybean | nucleus | 27.19 | 30.1 |
| VIT_09s0002g00470.t01 | Wine grape | nucleus | 34.14 | 29.82 |
| PGSC0003DMT400012547 | Potato | nucleus | 29.61 | 26.34 |
| KRH69017 | Soybean | nucleus | 27.19 | 26.09 |
| GSMUA_Achr2P07300_001 | Banana | nucleus | 25.98 | 26.06 |
| Solyc06g063070.2.1 | Tomato | nucleus | 28.7 | 25.54 |
| Solyc03g123500.2.1 | Tomato | nucleus | 29.31 | 25.13 |
| KRH06265 | Soybean | nucleus | 28.7 | 24.87 |
| PGSC0003DMT400023609 | Potato | nucleus | 28.7 | 24.36 |
| TraesCS5B01G214400.1 | Wheat | nucleus | 28.4 | 24.35 |
| KRH47694 | Soybean | nucleus | 28.4 | 23.98 |
| GSMUA_AchrUn_... | Banana | nucleus | 26.89 | 23.8 |
| TraesCS5B01G315500.2 | Wheat | nucleus | 14.5 | 22.86 |
| TraesCS1B01G243200.1 | Wheat | nucleus | 12.39 | 22.16 |
| PGSC0003DMT400074248 | Potato | nucleus | 25.68 | 21.91 |
| Solyc12g049560.1.1 | Tomato | nucleus | 25.38 | 21.76 |
| TraesCS4B01G299500.1 | Wheat | nucleus | 20.54 | 21.52 |
| TraesCS4B01G299400.1 | Wheat | nucleus | 19.34 | 20.45 |
| TraesCS6B01G350100.1 | Wheat | nucleus | 11.48 | 20.32 |
| TraesCS6B01G350000.1 | Wheat | nucleus | 11.18 | 19.68 |
| TraesCS7B01G162100.1 | Wheat | plastid | 12.69 | 18.75 |
| TraesCS6B01G350400.1 | Wheat | nucleus | 12.69 | 16.6 |
| TraesCS2B01G304800.1 | Wheat | nucleus | 12.69 | 16.6 |
| TraesCS1B01G389700.1 | Wheat | nucleus | 12.39 | 16.33 |
| TraesCS1B01G389800.1 | Wheat | nucleus | 12.69 | 16.22 |
| TraesCS1B01G389900.1 | Wheat | nucleus | 12.99 | 16.1 |
| TraesCS5B01G236900.1 | Wheat | nucleus | 11.48 | 15.7 |
| TraesCS5B01G118200.1 | Wheat | nucleus | 12.99 | 12.61 |
Protein Annotations
| MapMan:15.5.7.1 | Gene3D:3.30.730.10 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | InterPro:DNA-bd_dom_sf | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR001471 | InterPro:IPR036955 |
| PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31190 | PANTHER:PTHR31190:SF44 | SMART:SM00380 | SUPFAM:SSF54171 |
| EnsemblPlantsGene:TraesCS6B01G427100 | EnsemblPlants:TraesCS6B01G427100.1 | TIGR:cd00018 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr6B:-:695809828..695811508
Molecular Weight (calculated)
36738.7 Da
IEP (calculated)
9.069
GRAVY (calculated)
-0.452
Length
331 amino acids
Sequence
(BLAST)
(BLAST)
001: MRRVVEAVLW PDKKKPWWCG GGSRGFMGLG GLGVELGFDN DDVGLKANFK ELDDLSTMTT DFDGPAQRSA KRKSKNQFMG IRQRSRARWG AEIRDPIKGV
101: RLWLGTFNSA EEAARAYNVE ARRIHGKKAK INFPEEPKLP QKSRAPPASP KVPKPSAAQE HSFIPAFNNL VNQNAFVYPS AHFASKQQLV QPENVPFVPP
201: MSTIAPVEAP VMNMYSDRGS NSFGFSKLGW KYHTKTPDIS SIAPISTIAE GAEPVLVENN TYNSLVPPVM ENNVVNFEPW MRYLMDDSVD EMIDSLLNFD
301: VPRDVVSNRT FGASMPCPSV ANFSEGSKPC I
101: RLWLGTFNSA EEAARAYNVE ARRIHGKKAK INFPEEPKLP QKSRAPPASP KVPKPSAAQE HSFIPAFNNL VNQNAFVYPS AHFASKQQLV QPENVPFVPP
201: MSTIAPVEAP VMNMYSDRGS NSFGFSKLGW KYHTKTPDIS SIAPISTIAE GAEPVLVENN TYNSLVPPVM ENNVVNFEPW MRYLMDDSVD EMIDSLLNFD
301: VPRDVVSNRT FGASMPCPSV ANFSEGSKPC I
001: MCGGAVISDY IAPEKIARSS GKSSWRSNGV FDCSIYDFDG NFDELESDEP FVFSSTHKHH ASGSASDGKK KQSSRYKGIR RRPWGRWAAE IRDPIKGVRV
101: WLGTFNTAEE AARAYDLEAK RIRGAKAKLN FPNESSGKRK AKAKTVQQVE ENHEADLDVA VVSSAPSSSC LDFLWEENNP DTLLIDTQWL EDIIMGDANK
201: KHEPNDSEEA NNVDASLLSE ELLAFENQTE YFSQMPFTEG NCDSSTSLSS LFDGGNDMGL WS
101: WLGTFNTAEE AARAYDLEAK RIRGAKAKLN FPNESSGKRK AKAKTVQQVE ENHEADLDVA VVSSAPSSSC LDFLWEENNP DTLLIDTQWL EDIIMGDANK
201: KHEPNDSEEA NNVDASLLSE ELLAFENQTE YFSQMPFTEG NCDSSTSLSS LFDGGNDMGL WS
Arabidopsis Description
HRE1Integrase-type DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IDA7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.