Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
- nucleus 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G223700.1 | Wheat | nucleus | 94.56 | 95.8 |
| TraesCS5A01G215900.1 | Wheat | nucleus | 91.45 | 93.63 |
| HORVU5Hr1G062940.1 | Barley | nucleus, plastid | 87.31 | 82.8 |
| Os09t0434500-01 | Rice | vacuole | 70.98 | 69.19 |
| VIT_09s0002g00470.t01 | Wine grape | nucleus | 40.16 | 40.9 |
| GSMUA_Achr10P... | Banana | nucleus | 30.31 | 40.77 |
| KRH69017 | Soybean | nucleus | 35.75 | 40.0 |
| TraesCS5B01G315500.2 | Wheat | nucleus | 21.5 | 39.52 |
| TraesCS6B01G126700.1 | Wheat | nucleus, plastid | 24.09 | 39.41 |
| Solyc06g063070.2.1 | Tomato | nucleus | 37.56 | 38.98 |
| KRG97290 | Soybean | nucleus | 29.53 | 38.13 |
| Solyc03g123500.2.1 | Tomato | nucleus | 37.82 | 37.82 |
| PGSC0003DMT400012547 | Potato | nucleus | 36.27 | 37.63 |
| PGSC0003DMT400023609 | Potato | nucleus | 37.82 | 37.44 |
| TraesCS6B01G375400.1 | Wheat | nucleus | 37.56 | 36.43 |
| PGSC0003DMT400074248 | Potato | nucleus | 36.01 | 35.82 |
| TraesCS7B01G062200.1 | Wheat | nucleus | 32.64 | 35.49 |
| KRH06265 | Soybean | nucleus | 34.97 | 35.34 |
| Solyc12g049560.1.1 | Tomato | nucleus | 35.23 | 35.23 |
| KRH47694 | Soybean | nucleus | 34.46 | 33.93 |
| TraesCS6B01G126600.1 | Wheat | nucleus | 31.87 | 33.61 |
| TraesCS7B01G283900.1 | Wheat | nucleus | 24.09 | 33.33 |
| TraesCS4B01G299400.1 | Wheat | nucleus | 26.94 | 33.23 |
| TraesCS7B01G324400.1 | Wheat | nucleus | 26.68 | 33.01 |
| TraesCS4B01G299500.1 | Wheat | nucleus | 26.42 | 32.28 |
| TraesCS6B01G125900.1 | Wheat | nucleus | 31.09 | 31.17 |
| TraesCS1B01G243200.1 | Wheat | nucleus | 14.77 | 30.81 |
| TraesCS6B01G427100.1 | Wheat | nucleus | 24.35 | 28.4 |
| TraesCS7B01G278700.1 | Wheat | nucleus | 27.72 | 27.94 |
| EES13952 | Sorghum | nucleus | 26.42 | 27.49 |
| Zm00001d032095_P001 | Maize | nucleus | 25.65 | 26.05 |
| TraesCS1B01G389700.1 | Wheat | nucleus | 16.84 | 25.9 |
| TraesCS6B01G350000.1 | Wheat | nucleus | 12.18 | 25.0 |
| TraesCS7B01G162100.1 | Wheat | plastid | 14.51 | 25.0 |
| TraesCS1B01G389800.1 | Wheat | nucleus | 16.58 | 24.71 |
| TraesCS6B01G350100.1 | Wheat | nucleus | 11.92 | 24.6 |
| TraesCS2B01G304800.1 | Wheat | nucleus | 16.06 | 24.51 |
| TraesCS5B01G236900.1 | Wheat | nucleus | 15.29 | 24.38 |
| TraesCS1B01G389900.1 | Wheat | nucleus | 15.54 | 22.47 |
| TraesCS6B01G350400.1 | Wheat | nucleus | 14.25 | 21.74 |
| TraesCS5B01G118200.1 | Wheat | nucleus | 15.03 | 17.01 |
Protein Annotations
| MapMan:15.5.7.1 | Gene3D:3.30.730.10 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | ncoils:Coil | InterPro:DNA-bd_dom_sf |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR001471 |
| InterPro:IPR036955 | PFAM:PF00847 | PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31190 | PANTHER:PTHR31190:SF8 |
| SMART:SM00380 | SUPFAM:SSF54171 | EnsemblPlantsGene:TraesCS5B01G214400 | EnsemblPlants:TraesCS5B01G214400.1 | TIGR:cd00018 | SEG:seg |
Description
No Description!
Coordinates
chr5B:-:387173738..387176452
Molecular Weight (calculated)
41644.6 Da
IEP (calculated)
4.754
GRAVY (calculated)
-0.546
Length
386 amino acids
Sequence
(BLAST)
(BLAST)
001: MCGGAILAGF IPPSAAAAAA KAAAAKKQQQ QQQQQQRSVT ADSLWPGLRK KPAEEEDFEA DFRDFERDSN DDDDAVEEVP PPPATAGFAF AAAAEVALPA
101: PTRLDAIQHD GPAAKSVKRV RKNQYRGIRQ RPWGKWAAEI RDPSKGVRVW LGTYDTAEEA ARAYDAEARK IRGKKAKVNF PEEAPTVQKS TLKPTAVKSA
201: KLAPPPKTCE DEPFNHLSRG DNDLFAMFAF NDKKVSAKPA ESVDSLLPVK PLVPTETFGM NMLSDQSSNS FGSTDFGWDD EAMTPDYTSV FVPNAAAMPA
301: YGEPAYLQGG APKRMRNNFG VAVLPQGNGA QDIPAFDHEM KYSLPYVESS SDGSMDSLLL NGAMQDGASS GDLWSLDELF MAAGGY
101: PTRLDAIQHD GPAAKSVKRV RKNQYRGIRQ RPWGKWAAEI RDPSKGVRVW LGTYDTAEEA ARAYDAEARK IRGKKAKVNF PEEAPTVQKS TLKPTAVKSA
201: KLAPPPKTCE DEPFNHLSRG DNDLFAMFAF NDKKVSAKPA ESVDSLLPVK PLVPTETFGM NMLSDQSSNS FGSTDFGWDD EAMTPDYTSV FVPNAAAMPA
301: YGEPAYLQGG APKRMRNNFG VAVLPQGNGA QDIPAFDHEM KYSLPYVESS SDGSMDSLLL NGAMQDGASS GDLWSLDELF MAAGGY
001: MCGGAIISDF IPPPRSRRVT SEFIWPDLKK NLKGSKKSSK NRSNFFDFDA EFEADFQGFK DDSSIDCDDD FDVGDVFADV KPFVFTSTPK PAVSAAAEVF
101: GKKVTGLDGD AEKSANRKRK NQYRGIRQRP WGKWAAEIRD PREGARIWLG TFKTAEEAAR AYDAAARRIR GSKAKVNFPE ENMKANSQKR SVKANLQKPV
201: AKPNPNPSPA LVQNSNISFE NMCFMEEKHQ VSNNNNNQFG MTNSVDAGCN GYQYFSSDQG SNSFDCSEFG WSDQAPITPD ISSAVINNNN SALFFEEANP
301: AKKLKSMDFE TPYNNTEWDA SLDFLNEDAV TTQDNGANPM DLWSIDEIHS MIGGVF
101: GKKVTGLDGD AEKSANRKRK NQYRGIRQRP WGKWAAEIRD PREGARIWLG TFKTAEEAAR AYDAAARRIR GSKAKVNFPE ENMKANSQKR SVKANLQKPV
201: AKPNPNPSPA LVQNSNISFE NMCFMEEKHQ VSNNNNNQFG MTNSVDAGCN GYQYFSSDQG SNSFDCSEFG WSDQAPITPD ISSAVINNNN SALFFEEANP
301: AKKLKSMDFE TPYNNTEWDA SLDFLNEDAV TTQDNGANPM DLWSIDEIHS MIGGVF
Arabidopsis Description
RAP2-12Ethylene-responsive transcription factor RAP2-12 [Source:UniProtKB/Swiss-Prot;Acc:Q9SSA8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.