Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
- nucleus 2
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G215900.1 | Wheat | nucleus | 95.01 | 96.02 |
| TraesCS5B01G214400.1 | Wheat | nucleus | 95.8 | 94.56 |
| HORVU5Hr1G062940.1 | Barley | nucleus, plastid | 89.5 | 83.78 |
| Os09t0434500-01 | Rice | vacuole | 71.92 | 69.19 |
| TraesCS5D01G320800.1 | Wheat | nucleus | 21.52 | 41.41 |
| GSMUA_Achr10P... | Banana | nucleus | 30.71 | 40.77 |
| VIT_09s0002g00470.t01 | Wine grape | nucleus | 39.9 | 40.11 |
| KRH69017 | Soybean | nucleus | 36.22 | 40.0 |
| KRG97290 | Soybean | nucleus | 29.92 | 38.13 |
| Solyc06g063070.2.1 | Tomato | nucleus | 37.01 | 37.9 |
| Solyc03g123500.2.1 | Tomato | nucleus | 38.32 | 37.82 |
| PGSC0003DMT400023609 | Potato | nucleus | 38.06 | 37.18 |
| PGSC0003DMT400012547 | Potato | nucleus | 36.22 | 37.1 |
| TraesCS7D01G158500.1 | Wheat | nucleus | 33.07 | 35.49 |
| KRH06265 | Soybean | nucleus | 35.43 | 35.34 |
| PGSC0003DMT400074248 | Potato | nucleus | 35.96 | 35.31 |
| TraesCS6D01G324200.1 | Wheat | nucleus | 36.48 | 34.92 |
| Solyc12g049560.1.1 | Tomato | nucleus | 35.17 | 34.72 |
| TraesCS7D01G416300.1 | Wheat | nucleus | 29.66 | 34.14 |
| KRH47694 | Soybean | nucleus | 34.91 | 33.93 |
| TraesCS7D01G378200.1 | Wheat | nucleus | 24.41 | 33.33 |
| TraesCS6D01G084200.1 | Wheat | nucleus | 33.07 | 33.25 |
| TraesCS6D01G085000.1 | Wheat | nucleus | 27.3 | 32.1 |
| TraesCS4D01G298400.1 | Wheat | nucleus | 26.51 | 32.06 |
| TraesCS1D01G230900.1 | Wheat | nucleus | 14.7 | 30.43 |
| TraesCS7D01G373700.1 | Wheat | nucleus | 28.61 | 30.36 |
| TraesCS6D01G084900.1 | Wheat | nucleus | 30.71 | 30.08 |
| EES13952 | Sorghum | nucleus | 26.77 | 27.49 |
| Zm00001d032095_P001 | Maize | nucleus | 25.98 | 26.05 |
| TraesCS6D01G298700.1 | Wheat | nucleus | 12.6 | 25.67 |
| TraesCS7D01G265000.1 | Wheat | plastid | 14.96 | 25.45 |
| TraesCS1D01G376600.1 | Wheat | nucleus | 17.59 | 25.28 |
| TraesCS6D01G299000.1 | Wheat | nucleus | 12.34 | 25.0 |
| TraesCS1D01G376700.1 | Wheat | nucleus | 17.32 | 24.81 |
| TraesCS2D01G286300.1 | Wheat | nucleus | 16.27 | 24.51 |
| TraesCS5D01G245300.1 | Wheat | nucleus | 15.49 | 23.98 |
| TraesCS1D01G376800.1 | Wheat | nucleus | 16.27 | 23.22 |
| TraesCS6D01G298800.1 | Wheat | nucleus | 13.12 | 22.73 |
| TraesCS1D01G376500.1 | Wheat | nucleus | 16.01 | 22.51 |
| TraesCS6D01G299100.1 | Wheat | nucleus, plastid | 13.91 | 17.85 |
| TraesCS5D01G129400.1 | Wheat | nucleus | 14.96 | 17.43 |
Protein Annotations
| MapMan:15.5.7.1 | Gene3D:3.30.730.10 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | InterPro:DNA-bd_dom_sf | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR001471 | InterPro:IPR036955 |
| PFAM:PF00847 | PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31190 | PANTHER:PTHR31190:SF8 | SMART:SM00380 |
| SUPFAM:SSF54171 | EnsemblPlantsGene:TraesCS5D01G223700 | EnsemblPlants:TraesCS5D01G223700.1 | TIGR:cd00018 | SEG:seg | : |
Description
No Description!
Coordinates
chr5D:-:331402871..331405951
Molecular Weight (calculated)
40909.9 Da
IEP (calculated)
4.884
GRAVY (calculated)
-0.471
Length
381 amino acids
Sequence
(BLAST)
(BLAST)
001: MCGGAILAGF IPPSAAAAAA KAAAAKKKQQ QRSVTADSLW PGLRKKAAEE EDFEADFRDF ERDSSDDDAV VEEVPPPPAS AGFAFAAAAE VAPPAPARLD
101: AVQHDGPAAK QVKRVRKNQY RGIRQRPWGK WAAEIRDPSK GVRVWLGTYD TAEEAARAYD AEARKIRGKK AKVNFPEDAP TVQKSTLKPT AAKSAKLAPP
201: PKACEDEPFN HLSRGDNDLF AMFAFNDKKV PAKPAESVDS LLPVKPLVPT ETFGMNMLSD QSSNSFGSTD FGWDDEVMTP DYTSVFVPNA AAMPAYGEPA
301: YLQGGAPKRM RNNFGVAVLP QGNVAQDIPA FDHEMKYSLP YVESSSDGSM DSLLLNGAMQ DGASSGDLWS LDELFMAAGG Y
101: AVQHDGPAAK QVKRVRKNQY RGIRQRPWGK WAAEIRDPSK GVRVWLGTYD TAEEAARAYD AEARKIRGKK AKVNFPEDAP TVQKSTLKPT AAKSAKLAPP
201: PKACEDEPFN HLSRGDNDLF AMFAFNDKKV PAKPAESVDS LLPVKPLVPT ETFGMNMLSD QSSNSFGSTD FGWDDEVMTP DYTSVFVPNA AAMPAYGEPA
301: YLQGGAPKRM RNNFGVAVLP QGNVAQDIPA FDHEMKYSLP YVESSSDGSM DSLLLNGAMQ DGASSGDLWS LDELFMAAGG Y
001: MCGGAIISDF IPPPRSRRVT SEFIWPDLKK NLKGSKKSSK NRSNFFDFDA EFEADFQGFK DDSSIDCDDD FDVGDVFADV KPFVFTSTPK PAVSAAAEVF
101: GKKVTGLDGD AEKSANRKRK NQYRGIRQRP WGKWAAEIRD PREGARIWLG TFKTAEEAAR AYDAAARRIR GSKAKVNFPE ENMKANSQKR SVKANLQKPV
201: AKPNPNPSPA LVQNSNISFE NMCFMEEKHQ VSNNNNNQFG MTNSVDAGCN GYQYFSSDQG SNSFDCSEFG WSDQAPITPD ISSAVINNNN SALFFEEANP
301: AKKLKSMDFE TPYNNTEWDA SLDFLNEDAV TTQDNGANPM DLWSIDEIHS MIGGVF
101: GKKVTGLDGD AEKSANRKRK NQYRGIRQRP WGKWAAEIRD PREGARIWLG TFKTAEEAAR AYDAAARRIR GSKAKVNFPE ENMKANSQKR SVKANLQKPV
201: AKPNPNPSPA LVQNSNISFE NMCFMEEKHQ VSNNNNNQFG MTNSVDAGCN GYQYFSSDQG SNSFDCSEFG WSDQAPITPD ISSAVINNNN SALFFEEANP
301: AKKLKSMDFE TPYNNTEWDA SLDFLNEDAV TTQDNGANPM DLWSIDEIHS MIGGVF
Arabidopsis Description
RAP2-12Ethylene-responsive transcription factor RAP2-12 [Source:UniProtKB/Swiss-Prot;Acc:Q9SSA8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.