Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G097500.1 | Wheat | nucleus | 84.26 | 75.0 |
| TraesCS6D01G084200.1 | Wheat | nucleus | 84.57 | 72.3 |
| TraesCS7D01G378200.1 | Wheat | nucleus | 58.02 | 67.38 |
| TraesCS6D01G324200.1 | Wheat | nucleus | 75.93 | 61.81 |
| TraesCS6D01G084900.1 | Wheat | nucleus | 70.99 | 59.13 |
| HORVU6Hr1G076090.2 | Barley | nucleus | 57.72 | 58.44 |
| TraesCS7D01G373700.1 | Wheat | nucleus | 59.26 | 53.48 |
| TraesCS7D01G416300.1 | Wheat | nucleus | 52.16 | 51.06 |
| EES07642 | Sorghum | nucleus | 54.63 | 48.1 |
| Zm00001d052087_P001 | Maize | nucleus | 53.4 | 47.92 |
| TraesCS7D01G158500.1 | Wheat | nucleus | 46.6 | 42.54 |
| Zm00001d018305_P001 | Maize | nucleus | 34.57 | 39.72 |
| KRG97290 | Soybean | nucleus | 31.48 | 34.11 |
| VIT_09s0002g00470.t01 | Wine grape | nucleus | 39.51 | 33.77 |
| TraesCS5D01G320800.1 | Wheat | nucleus | 20.06 | 32.83 |
| KRH69017 | Soybean | nucleus | 33.02 | 31.01 |
| GSMUA_Achr2P07300_001 | Banana | nucleus | 30.56 | 30.0 |
| PGSC0003DMT400012547 | Potato | nucleus | 33.95 | 29.57 |
| Solyc06g063070.2.1 | Tomato | nucleus | 33.64 | 29.3 |
| Solyc03g123500.2.1 | Tomato | nucleus | 34.88 | 29.27 |
| Solyc12g049560.1.1 | Tomato | nucleus | 33.95 | 28.5 |
| KRH06265 | Soybean | nucleus | 33.33 | 28.27 |
| PGSC0003DMT400023609 | Potato | nucleus | 33.64 | 27.95 |
| TraesCS1D01G230900.1 | Wheat | nucleus | 15.74 | 27.72 |
| KRH47694 | Soybean | nucleus | 33.33 | 27.55 |
| PGSC0003DMT400074248 | Potato | nucleus | 32.72 | 27.32 |
| TraesCS5D01G223700.1 | Wheat | nucleus | 32.1 | 27.3 |
| GSMUA_AchrUn_... | Banana | nucleus | 30.86 | 26.74 |
| TraesCS4D01G298400.1 | Wheat | nucleus | 25.31 | 26.03 |
| TraesCS7D01G265000.1 | Wheat | plastid | 16.67 | 24.11 |
| TraesCS6D01G298700.1 | Wheat | nucleus | 12.96 | 22.46 |
| TraesCS6D01G299000.1 | Wheat | nucleus | 12.96 | 22.34 |
| TraesCS2D01G286300.1 | Wheat | nucleus | 17.28 | 22.13 |
| TraesCS1D01G376600.1 | Wheat | nucleus | 16.05 | 19.62 |
| TraesCS1D01G376500.1 | Wheat | nucleus | 16.36 | 19.56 |
| TraesCS1D01G376700.1 | Wheat | nucleus | 16.05 | 19.55 |
| TraesCS6D01G298800.1 | Wheat | nucleus | 13.27 | 19.55 |
| TraesCS5D01G245300.1 | Wheat | nucleus | 14.81 | 19.51 |
| TraesCS1D01G376800.1 | Wheat | nucleus | 15.74 | 19.1 |
| TraesCS6D01G299100.1 | Wheat | nucleus, plastid | 16.36 | 17.85 |
| TraesCS5D01G129400.1 | Wheat | nucleus | 15.74 | 15.6 |
Protein Annotations
| MapMan:15.5.7.1 | Gene3D:3.30.730.10 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | InterPro:DNA-bd_dom_sf | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR001471 | InterPro:IPR036955 |
| PFAM:PF00847 | PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31190 | PANTHER:PTHR31190:SF44 | SMART:SM00380 |
| SUPFAM:SSF54171 | EnsemblPlantsGene:TraesCS6D01G085000 | EnsemblPlants:TraesCS6D01G085000.1 | TIGR:cd00018 | : | : |
Description
No Description!
Coordinates
chr6D:+:50604278..50606079
Molecular Weight (calculated)
35857.6 Da
IEP (calculated)
4.581
GRAVY (calculated)
-0.501
Length
324 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDFEVESGD SDVELRRTRV DEKDDHNEVV EIKSFAAAKS SLSQGFDGSS AKRKRKSQFR GIRQRPWGKW AAEIRDPSKG ARVWLGTFNS AEEAARAYDV
101: EARRIRGNKA KVNFPKELII PQKRRARPAA PKSPKLSVAP EPSVMPSVNN LANPNAFIYP SANFASNQPL ALPDNLSFVH AMNSDGHVEA SVMNSYSDQG
201: INSFSFSDLE WDYDTKNPDI PSIAPISTIT EGAESALAQS NAYNSVVIAG GAESALAQSN TNNLVVPHVM ENNDVDFEAW TRFLIYDGVD EPIDSLLNFD
301: VPRDVIGNMD LWSFDDMPMC GEFF
101: EARRIRGNKA KVNFPKELII PQKRRARPAA PKSPKLSVAP EPSVMPSVNN LANPNAFIYP SANFASNQPL ALPDNLSFVH AMNSDGHVEA SVMNSYSDQG
201: INSFSFSDLE WDYDTKNPDI PSIAPISTIT EGAESALAQS NAYNSVVIAG GAESALAQSN TNNLVVPHVM ENNDVDFEAW TRFLIYDGVD EPIDSLLNFD
301: VPRDVIGNMD LWSFDDMPMC GEFF
001: MSQSFELYPW LGSASDGKKK QSSRYKGIRR RPWGRWAAEI RDPIKGVRVW LGTFNTAEEA ARAYDLEAKR IRGAKAKLNF PNESSGKRKA KAKTVQQVEE
101: NHEADLDVAV VSSAPSSSCL DFLWEENNPD TLLIDTQWLE DIIMGDANKK HEPNDSEEAN NVDASLLSEE LLAFENQTEY FSQMPFTEGN CDSSTSLSSL
201: FDGGNDMGLW S
101: NHEADLDVAV VSSAPSSSCL DFLWEENNPD TLLIDTQWLE DIIMGDANKK HEPNDSEEAN NVDASLLSEE LLAFENQTEY FSQMPFTEGN CDSSTSLSSL
201: FDGGNDMGLW S
Arabidopsis Description
HRE1Integrase-type DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IDA7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.