Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G319500.1 | Wheat | nucleus | 89.3 | 88.83 |
| TraesCS6D01G299000.1 | Wheat | nucleus | 88.77 | 88.3 |
| TraesCS6B01G350100.1 | Wheat | nucleus | 88.24 | 88.24 |
| TraesCS6B01G350000.1 | Wheat | nucleus | 88.24 | 87.77 |
| HORVU6Hr1G078520.1 | Barley | nucleus | 86.1 | 86.1 |
| TraesCS6D01G298800.1 | Wheat | nucleus | 70.59 | 60.0 |
| TraesCS6D01G299100.1 | Wheat | nucleus, plastid | 72.73 | 45.79 |
| Os02t0764700-01 | Rice | nucleus | 57.22 | 44.21 |
| KXG31168 | Sorghum | nucleus | 57.22 | 42.97 |
| Zm00001d018158_P001 | Maize | nucleus | 50.8 | 40.25 |
| Zm00001d052167_P001 | Maize | nucleus | 49.2 | 40.0 |
| TraesCS5D01G245300.1 | Wheat | nucleus | 43.85 | 33.33 |
| TraesCS1D01G376800.1 | Wheat | nucleus | 43.85 | 30.71 |
| TraesCS1D01G376600.1 | Wheat | nucleus | 43.32 | 30.57 |
| TraesCS1D01G376700.1 | Wheat | nucleus | 41.71 | 29.32 |
| TraesCS1D01G376500.1 | Wheat | nucleus | 40.11 | 27.68 |
| TraesCS1D01G230900.1 | Wheat | nucleus | 22.46 | 22.83 |
| TraesCS7D01G265000.1 | Wheat | plastid | 27.27 | 22.77 |
| TraesCS5D01G320800.1 | Wheat | nucleus | 22.99 | 21.72 |
| TraesCS5D01G129400.1 | Wheat | nucleus | 35.29 | 20.18 |
| TraesCS2D01G286300.1 | Wheat | nucleus | 26.2 | 19.37 |
| TraesCS4D01G298400.1 | Wheat | nucleus | 24.6 | 14.6 |
| TraesCS6D01G085000.1 | Wheat | nucleus | 22.46 | 12.96 |
| TraesCS7D01G373700.1 | Wheat | nucleus | 24.6 | 12.81 |
| TraesCS5D01G223700.1 | Wheat | nucleus | 25.67 | 12.6 |
| TraesCS6D01G324200.1 | Wheat | nucleus | 26.74 | 12.56 |
| TraesCS7D01G378200.1 | Wheat | nucleus | 18.72 | 12.54 |
| TraesCS7D01G416300.1 | Wheat | nucleus | 21.93 | 12.39 |
| TraesCS7D01G158500.1 | Wheat | nucleus | 22.99 | 12.11 |
| TraesCS6D01G084900.1 | Wheat | nucleus | 25.13 | 12.08 |
| TraesCS6D01G084200.1 | Wheat | nucleus | 23.53 | 11.61 |
Protein Annotations
| MapMan:15.5.7.1 | Gene3D:3.30.730.10 | InterPro:AP2/ERF-transcript_factor | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | InterPro:DNA-bd_dom_sf |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR001471 |
| InterPro:IPR036955 | PFAM:PF00847 | PIRSF:PIRSF038123 | PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31190 |
| PANTHER:PTHR31190:SF80 | SMART:SM00380 | SUPFAM:SSF54171 | EnsemblPlantsGene:TraesCS6D01G298700 | EnsemblPlants:TraesCS6D01G298700.1 | TIGR:cd00018 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr6D:+:409516230..409517565
Molecular Weight (calculated)
19775.3 Da
IEP (calculated)
9.569
GRAVY (calculated)
-0.068
Length
187 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPRLERGGS GFHLPNSELE DSLFLRALIS VVNGDAVVPT LHLEPSSTPH FAAAAPARAS CGVDGCLGCV FVAAAATTSS SSEGEGCFAA SFVMDGGVGR
101: ITRRRRRSKF RGVRQRSWGK WAAEIRDPHR AVRKWLGTFD TAVDPARAYD LAALEFRGHR AILNFPAAAA SSSAASVSDS SWVAAQS
101: ITRRRRRSKF RGVRQRSWGK WAAEIRDPHR AVRKWLGTFD TAVDPARAYD LAALEFRGHR AILNFPAAAA SSSAASVSDS SWVAAQS
001: MHSGKRPLSP ESMAGNREEK KELCCCSTLS ESDVSDFVSE LTGQPIPSSI DDQSSSLTLQ EKSNSRQRNY RGVRQRPWGK WAAEIRDPNK AARVWLGTFD
101: TAEEAALAYD KAAFEFRGHK AKLNFPEHIR VNPTQLYPSP ATSHDRIIVT PPSPPPPIAP DILLDQYGHF QSRSSDSSAN LSMNMLSSSS SSLNHQGLRP
201: NLEDGENVKN ISIHKRRK
101: TAEEAALAYD KAAFEFRGHK AKLNFPEHIR VNPTQLYPSP ATSHDRIIVT PPSPPPPIAP DILLDQYGHF QSRSSDSSAN LSMNMLSSSS SSLNHQGLRP
201: NLEDGENVKN ISIHKRRK
Arabidopsis Description
Integrase-type DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IFX1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.