Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G112600.1 | Wheat | nucleus | 95.72 | 95.43 |
| TraesCS5B01G118200.1 | Wheat | nucleus | 95.72 | 91.79 |
| HORVU5Hr1G036590.2 | Barley | nucleus | 81.35 | 84.71 |
| TraesCS6D01G298700.1 | Wheat | nucleus | 20.18 | 35.29 |
| TraesCS6D01G299000.1 | Wheat | nucleus | 19.88 | 34.57 |
| GSMUA_Achr6P18020_001 | Banana | nucleus | 26.91 | 33.21 |
| TraesCS1D01G230900.1 | Wheat | nucleus | 18.65 | 33.15 |
| TraesCS7D01G265000.1 | Wheat | plastid | 22.02 | 32.14 |
| Zm00001d053195_P002 | Maize | nucleus | 30.28 | 30.09 |
| TraesCS2D01G286300.1 | Wheat | nucleus | 23.24 | 30.04 |
| TraesCS6D01G298800.1 | Wheat | nucleus | 19.88 | 29.55 |
| TraesCS5D01G320800.1 | Wheat | nucleus | 17.74 | 29.29 |
| TraesCS1D01G376600.1 | Wheat | nucleus | 23.55 | 29.06 |
| TraesCS1D01G376800.1 | Wheat | nucleus | 23.55 | 28.84 |
| KRH64120 | Soybean | nucleus | 24.77 | 28.83 |
| OQU78803 | Sorghum | nucleus | 29.97 | 28.74 |
| Solyc04g051360.2.1 | Tomato | nucleus | 26.61 | 28.71 |
| TraesCS1D01G376500.1 | Wheat | nucleus | 23.55 | 28.41 |
| TraesCS1D01G376700.1 | Wheat | nucleus | 22.63 | 27.82 |
| KRH43369 | Soybean | nucleus | 25.08 | 27.7 |
| TraesCS5D01G245300.1 | Wheat | nucleus | 20.8 | 27.64 |
| Os12t0168100-01 | Rice | nucleus | 28.44 | 27.27 |
| AT5G64750.1 | Thale cress | nucleus | 30.89 | 25.83 |
| Zm00001d023535_P001 | Maize | nucleus | 33.33 | 25.77 |
| VIT_07s0031g01980.t01 | Wine grape | nucleus | 27.52 | 25.57 |
| Bra037794.1-P | Field mustard | nucleus | 29.66 | 25.46 |
| Bra024325.1-P | Field mustard | nucleus | 30.28 | 25.06 |
| CDY14506 | Canola | nucleus | 29.97 | 25.0 |
| KRH59504 | Soybean | nucleus | 26.3 | 24.93 |
| TraesCS6D01G299100.1 | Wheat | nucleus, plastid | 22.63 | 24.92 |
| CDY46821 | Canola | nucleus | 29.05 | 24.87 |
| CDY08853 | Canola | nucleus | 29.97 | 24.81 |
| Bra031903.1-P | Field mustard | nucleus | 28.75 | 24.8 |
| CDY31304 | Canola | nucleus | 28.75 | 24.67 |
| KRH53825 | Soybean | nucleus | 24.16 | 24.53 |
| PGSC0003DMT400050718 | Potato | nucleus | 29.05 | 23.99 |
| CDX81250 | Canola | nucleus | 28.75 | 23.33 |
| TraesCS4D01G298400.1 | Wheat | nucleus | 19.57 | 20.32 |
| TraesCS7D01G416300.1 | Wheat | nucleus | 16.51 | 16.31 |
| TraesCS7D01G378200.1 | Wheat | nucleus | 13.76 | 16.13 |
| TraesCS7D01G158500.1 | Wheat | nucleus | 17.43 | 16.06 |
| TraesCS6D01G085000.1 | Wheat | nucleus | 15.6 | 15.74 |
| TraesCS7D01G373700.1 | Wheat | nucleus | 16.82 | 15.32 |
| TraesCS6D01G084200.1 | Wheat | nucleus | 17.43 | 15.04 |
| TraesCS5D01G223700.1 | Wheat | nucleus | 17.43 | 14.96 |
| TraesCS6D01G324200.1 | Wheat | nucleus | 18.04 | 14.82 |
| TraesCS6D01G084900.1 | Wheat | nucleus | 16.82 | 14.14 |
Protein Annotations
| MapMan:15.5.7.1 | Gene3D:3.30.730.10 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | InterPro:DNA-bd_dom_sf | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0006950 | GO:GO:0006970 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009605 | GO:GO:0009607 | GO:GO:0009628 | GO:GO:0009719 | GO:GO:0009737 |
| GO:GO:0009749 | GO:GO:0009788 | GO:GO:0009987 | GO:GO:0050832 | GO:GO:1902074 | InterPro:IPR001471 |
| InterPro:IPR036955 | PFAM:PF00847 | PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31190 | SMART:SM00380 |
| SUPFAM:SSF54171 | EnsemblPlantsGene:TraesCS5D01G129400 | EnsemblPlants:TraesCS5D01G129400.1 | TIGR:cd00018 | SEG:seg | : |
Description
No Description!
Coordinates
chr5D:-:203058012..203059819
Molecular Weight (calculated)
33881.8 Da
IEP (calculated)
5.651
GRAVY (calculated)
-0.639
Length
327 amino acids
Sequence
(BLAST)
(BLAST)
001: MCCGAEVADP GEHRRRLAAG DDDGGDGREE HAPSSPPPNT TMWRRRQAQE MSAMVSALAQ VVAGGVGEGG MASSTKRPAE HEAFAEEAWW STSYGGGDGD
101: GGAPSAASPF LADYTAAPAA SYSPHGAAAG DEELPSPSSA ESGGSGGAPR KRYRGVRQRP WGKWAAEIRD PHKAARVWLG TFDDAEAAAR AYDAAALGFR
201: GSRAKLNFPE SATIPPQQQP PPAPALAMPP PQRPEALLES QALLGGQAYS HYARFLLPST GGSTSGAPRT PAPPLIYSFG AGASYPLQPE SRGEGAGTER
301: PGPGVTSAAA WAAYSHEQPQ RRDDPSV
101: GGAPSAASPF LADYTAAPAA SYSPHGAAAG DEELPSPSSA ESGGSGGAPR KRYRGVRQRP WGKWAAEIRD PHKAARVWLG TFDDAEAAAR AYDAAALGFR
201: GSRAKLNFPE SATIPPQQQP PPAPALAMPP PQRPEALLES QALLGGQAYS HYARFLLPST GGSTSGAPRT PAPPLIYSFG AGASYPLQPE SRGEGAGTER
301: PGPGVTSAAA WAAYSHEQPQ RRDDPSV
001: MHSGKRPLSP ESMAGNREEK KELCCCSTLS ESDVSDFVSE LTGQPIPSSI DDQSSSLTLQ EKSNSRQRNY RGVRQRPWGK WAAEIRDPNK AARVWLGTFD
101: TAEEAALAYD KAAFEFRGHK AKLNFPEHIR VNPTQLYPSP ATSHDRIIVT PPSPPPPIAP DILLDQYGHF QSRSSDSSAN LSMNMLSSSS SSLNHQGLRP
201: NLEDGENVKN ISIHKRRK
101: TAEEAALAYD KAAFEFRGHK AKLNFPEHIR VNPTQLYPSP ATSHDRIIVT PPSPPPPIAP DILLDQYGHF QSRSSDSSAN LSMNMLSSSS SSLNHQGLRP
201: NLEDGENVKN ISIHKRRK
Arabidopsis Description
Integrase-type DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IFX1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.