CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
MultiLoc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os12t0168100-01	Rice	nucleus	43.7	43.7
OQU82952	Sorghum	mitochondrion	36.07	37.39
GSMUA_Achr6P18020_001	Banana	nucleus	26.98	34.72
EES18078	Sorghum	nucleus	18.18	31.16
HORVU5Hr1G036590.2	Barley	nucleus	27.86	30.25
TraesCS5D01G129400.1	Wheat	nucleus	28.74	29.97
TraesCS5A01G112600.1	Wheat	nucleus	28.74	29.88
KRH64120	Soybean	nucleus	24.05	29.18
TraesCS5B01G118200.1	Wheat	nucleus	28.45	28.45
KRH53825	Soybean	nucleus	24.93	26.4
KRH43369	Soybean	nucleus	21.7	25.0
KXG31168	Sorghum	nucleus	18.18	24.9
Solyc04g051360.2.1	Tomato	nucleus	21.99	24.75
EES00666	Sorghum	nucleus	16.42	24.67
OQU80805	Sorghum	nucleus	21.7	24.58
EER96855	Sorghum	mitochondrion, nucleus	19.94	23.13
VIT_07s0031g01980.t01	Wine grape	nucleus	23.46	22.73
KRH59504	Soybean	nucleus	22.87	22.61
OQU80635	Sorghum	nucleus	19.35	22.6
EER97023	Sorghum	nucleus	14.96	22.47
Bra031903.1-P	Field mustard	nucleus	23.75	21.37
CDY31304	Canola	nucleus	23.75	21.26
PGSC0003DMT400050718	Potato	nucleus	24.34	20.96
CDY46821	Canola	nucleus	23.46	20.94
Bra037794.1-P	Field mustard	nucleus	22.58	20.21
OQU85019	Sorghum	nucleus	17.3	20.21
AT5G64750.1	Thale cress	nucleus	23.17	20.2
OQU81440	Sorghum	nucleus	29.33	20.16
CDY14506	Canola	nucleus	22.87	19.9
CDY08853	Canola	nucleus	22.87	19.75
Bra024325.1-P	Field mustard	nucleus	22.87	19.75
CDX81250	Canola	nucleus	22.58	19.11
KXG40036	Sorghum	nucleus	18.18	18.51
KXG36690	Sorghum	nucleus	15.54	16.56
EER87998	Sorghum	nucleus	17.3	16.48
KXG35689	Sorghum	nucleus, plastid	17.3	15.13
EES07642	Sorghum	nucleus	15.54	14.4
EES13952	Sorghum	nucleus	14.66	13.48

Protein Annotations

MapMan:15.5.7.1	MapMan:15.5.7.2	Gene3D:3.30.730.10	UniProt:A0A1Z5R4U8	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471
InterPro:IPR036955	EnsemblPlants:OQU78803	ProteinID:OQU78803	ProteinID:OQU78803.1	PFAM:PF00847	PRINTS:PR00367
PFscan:PS51032	PANTHER:PTHR31190	PANTHER:PTHR31190:SF73	SMART:SM00380	EnsemblPlantsGene:SORBI_3008G050600	SUPFAM:SSF54171
UniParc:UPI000B8BABDE	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:-:5006856..5010668

Molecular Weight (calculated)

35521.6 Da

IEP (calculated)

6.238

GRAVY (calculated)

-0.555

Length

341 amino acids

Sequence
(BLAST)

001: MSAMVAALAK VVAGSAPPAA AEEPALAQED ASMDEAWWPY EDLHVAEPSS PARFVLHGYG ATEPSEQYWP AAAATYSHSQ SQHGAASAAT DDELPSPTSA
101: VGGSTSTSTS SRARAAAPVR NKRYRGVRQR PWGKWAAEIR DPHKAARVWL GTFDTAEDAA RAYDAAALRF RGSRAKLNFP ESATLPFSTP PPPATATHHH
201: QQQPPLTPAS RALTTTPPPL ARPEALLESQ ALPAGGGSRD PYLDYARFLQ SGGDGGGGDP SASSGTPAPS VTLPPPPAVP ASAAAAYGFG GEGETLRGYG
301: YLSPPPQRQS SAEPGNHPPA AWAGFYSSSY PPPPWPWDQS G

Best Arabidopsis Sequence Match ( AT2G33710.1 )
(BLAST)

001: MHSGKRPLSP ESMAGNREEK KELCCCSTLS ESDVSDFVSE LTGQPIPSSI DDQSSSLTLQ EKSNSRQRNY RGVRQRPWGK WAAEIRDPNK AARVWLGTFD
101: TAEEAALAYD KAAFEFRGHK AKLNFPEHIR VNPTQLYPSP ATSHDRIIVT PPSPPPPIAP DILLDQYGHF QSRSSDSSAN LSMNMLSSSS SSLNHQGLRP
201: NLEDGENVKN ISIHKRRK

Arabidopsis Description

Integrase-type DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IFX1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.