CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d020595_P001	Maize	nucleus	71.79	66.99
Os09t0434500-01	Rice	vacuole	67.95	66.92
GSMUA_Achr10P...	Banana	nucleus	32.31	43.9
VIT_09s0002g00470.t01	Wine grape	nucleus	38.97	40.11
KRH69017	Soybean	nucleus	35.13	39.71
EER87998	Sorghum	nucleus	36.41	39.66
Solyc06g063070.2.1	Tomato	nucleus	36.15	37.9
Solyc03g123500.2.1	Tomato	nucleus	37.44	37.82
KRG97290	Soybean	nucleus	28.97	37.79
PGSC0003DMT400023609	Potato	nucleus	37.69	37.69
PGSC0003DMT400012547	Potato	nucleus	35.64	37.37
EES00666	Sorghum	nucleus	21.54	37.0
KRH06265	Soybean	nucleus	34.87	35.6
EES07642	Sorghum	nucleus	33.08	35.05
PGSC0003DMT400074248	Potato	nucleus	34.87	35.05
Solyc12g049560.1.1	Tomato	nucleus	34.62	34.97
KRH47694	Soybean	nucleus	34.87	34.69
KXG36690	Sorghum	nucleus	28.46	34.69
KXG40036	Sorghum	nucleus	27.69	32.24
EES13952	Sorghum	nucleus	27.44	28.84
EES18078	Sorghum	nucleus	14.1	27.64
EER97023	Sorghum	nucleus	14.36	24.67
EER96855	Sorghum	mitochondrion, nucleus	16.41	21.77
KXG31168	Sorghum	nucleus	13.85	21.69
OQU80635	Sorghum	nucleus	15.9	21.23
OQU82952	Sorghum	mitochondrion	15.13	17.93
OQU78803	Sorghum	nucleus	15.13	17.3
OQU80805	Sorghum	nucleus	13.33	17.28
OQU85019	Sorghum	nucleus	12.82	17.12
OQU81440	Sorghum	nucleus	17.69	13.91

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	UniProt:A0A1B6QCP0	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955
EnsemblPlants:KXG35689	ProteinID:KXG35689	ProteinID:KXG35689.1	ProteinID:KXG35690.1	PFAM:PF00847	PRINTS:PR00367
PFscan:PS51032	PANTHER:PTHR31190	PANTHER:PTHR31190:SF8	SMART:SM00380	EnsemblPlantsGene:SORBI_3002G212000	SUPFAM:SSF54171
UniParc:UPI0001C80DEB	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:60448411..60451866

Molecular Weight (calculated)

41916.6 Da

IEP (calculated)

4.636

GRAVY (calculated)

-0.648

Length

390 amino acids

Sequence
(BLAST)

001: MCGGAILSGF IPPSGVAAAA AAAKKKQQQG RRVTADLLWP GPGKKGALPQ EEEDDFEADF REFERGLSED DDVDGAGEGG DDEVQELAPP EPVRFAFAAA
101: AKAPRPAVDG VMTPKDVQGD RPTANSVKRN RKNQYRGIRQ RPWGKWAAEI RDPSKGVRVW LGTYNTAEEA ARAYDAEARK IRGKKAKVNF PDEVPGAQKS
201: TAKPTDSNAT KLAPPPKACA DEVFSNLNND NNDLFAMFAF NDNKVPVKPA EVASFLPAVK PLVPSKRSAT NMLSDQNSNS YGSSDFGWDD DTMTSGYTFA
301: PNNAIPASYM QGGESKRMRN NYGVAMFQGN GAPSLAQVMP GFDPEMNYQP LPYVESSSSD ASMDSLLPQD GASNGDIWSL DELLMAAGAY

Best Arabidopsis Sequence Match ( AT1G53910.1 )
(BLAST)

001: MCGGAIISDF IPPPRSRRVT SEFIWPDLKK NLKGSKKSSK NRSNFFDFDA EFEADFQGFK DDSSIDCDDD FDVGDVFADV KPFVFTSTPK PAVSAAAEGS
101: VFGKKVTGLD GDAEKSANRK RKNQYRGIRQ RPWGKWAAEI RDPREGARIW LGTFKTAEEA ARAYDAAARR IRGSKAKVNF PEENMKANSQ KRSVKANLQK
201: PVAKPNPNPS PALVQNSNIS FENMCFMEEK HQVSNNNNNQ FGMTNSVDAG CNGYQYFSSD QGSNSFDCSE FGWSDQAPIT PDISSAVINN NNSALFFEEA
301: NPAKKLKSMD FETPYNNTEW DASLDFLNED AVTTQDNGAN PMDLWSIDEI HSMIGGVF

Arabidopsis Description

RAP2-12Ethylene-responsive transcription factor RAP2-12 [Source:UniProtKB/Swiss-Prot;Acc:Q9SSA8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.