CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d037941_P001	Maize	nucleus	78.39	80.83
TraesCS1D01G230900.1	Wheat	nucleus	62.81	67.93
TraesCS1A01G231200.1	Wheat	nucleus	60.3	66.67
TraesCS1B01G243200.1	Wheat	nucleus	59.3	63.78
Os05t0361700-01	Rice	nucleus	61.31	61.62
HORVU1Hr1G058940.4	Barley	nucleus, plastid	53.77	57.53
GSMUA_Achr3P08180_001	Banana	nucleus	50.75	51.27
AT2G47520.1	Thale cress	nucleus	25.63	29.82
CDY27480	Canola	nucleus	26.13	26.94
CDY51428	Canola	nucleus	26.13	26.53
GSMUA_Achr8P22500_001	Banana	nucleus	32.66	26.42
EES00666	Sorghum	nucleus	28.14	24.67
Bra021401.1-P	Field mustard	nucleus	26.13	24.41
EER97023	Sorghum	nucleus	26.13	22.91
KRH12100	Soybean	nucleus	25.13	22.42
KXG31168	Sorghum	nucleus	27.64	22.09
KRH37061	Soybean	nucleus	24.62	20.68
Solyc01g065980.2.1	Tomato	nucleus	26.13	20.47
VIT_05s0077g01860.t01	Wine grape	nucleus	26.63	20.46
PGSC0003DMT400043311	Potato	nucleus	26.13	19.7
OQU78803	Sorghum	nucleus	31.16	18.18
EER96855	Sorghum	mitochondrion, nucleus	26.63	18.03
OQU85019	Sorghum	nucleus	26.13	17.81
OQU80805	Sorghum	nucleus	26.63	17.61
KXG36690	Sorghum	nucleus	27.14	16.88
EER87998	Sorghum	nucleus	29.65	16.48
OQU82952	Sorghum	mitochondrion	27.14	16.41
OQU80635	Sorghum	nucleus	23.62	16.1
KXG40036	Sorghum	nucleus	25.13	14.93
EES07642	Sorghum	nucleus	27.14	14.67
EES13952	Sorghum	nucleus	27.14	14.56
KXG35689	Sorghum	nucleus, plastid	27.64	14.1
OQU81440	Sorghum	nucleus	27.14	10.89

Protein Annotations

Gene3D:3.30.730.10	MapMan:35.1	EntrezGene:8061915	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	UniProt:C5YWT9
InterPro:DNA-bd_dom_sf	EnsemblPlants:EES18078	ProteinID:EES18078	ProteinID:EES18078.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	PFAM:PF00847	PRINTS:PR00367
PFscan:PS51032	PANTHER:PTHR31190	PANTHER:PTHR31190:SF70	SMART:SM00380	EnsemblPlantsGene:SORBI_3009G111200	SUPFAM:SSF54171
UniParc:UPI0001A88CAF	RefSeq:XP_002439648.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr9:+:44785084..44786853

Molecular Weight (calculated)

20489.8 Da

IEP (calculated)

5.134

GRAVY (calculated)

-0.414

Length

199 amino acids

Sequence
(BLAST)

001: MCGGAIIADF VPAGGRRQAT DDTISASSLL SGEDQHLEEL GSRVPAPGRK TAYRGIRRRP WGRWAAEIRD PRKGARVWLG TYATPEDAAR AYDAAAREIR
101: GAKAKLNFPP AVGAGAGAGA REPAAKRRRT SSSAAAEESS GSSPAATTTV VAGVGGGGGG EETLRDCMSG LEAFLGLQEE AADEGGDAEA WDAVDLMFA

Best Arabidopsis Sequence Match ( AT3G16770.1 )
(BLAST)

001: MCGGAIISDY APLVTKAKGR KLTAEELWSE LDASAADDFW GFYSTSKLHP TNQVNVKEEA VKKEQATEPG KRRKRKNVYR GIRKRPWGKW AAEIRDPRKG
101: VRVWLGTFNT AEEAAMAYDV AAKQIRGDKA KLNFPDLHHP PPPNYTPPPS SPRSTDQPPA KKVCVVSQSE SELSQPSFPV ECIGFGNGDE FQNLSYGFEP
201: DYDLKQQISS LESFLELDGN TAEQPSQLDE SVSEVDMWML DDVIASYE

Arabidopsis Description

RAP2-3Ethylene-responsive transcription factor RAP2-3 [Source:UniProtKB/Swiss-Prot;Acc:P42736]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.