Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G16770.1 | KRH22291 | AT2G42580.1 | 19000166 |
| AT3G16770.1 | KRH27037 | AT2G42580.1 | 19000166 |
| AT3G16770.1 | KRH53542 | AT4G27780.1 | 15159625 |
| AT3G16770.1 | KRH64393 | AT4G27780.1 | 15159625 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH37061 | Soybean | nucleus | 87.0 | 81.86 |
| CDY34977 | Canola | nucleus | 48.43 | 44.81 |
| Bra021200.1-P | Field mustard | nucleus | 48.43 | 44.44 |
| VIT_05s0077g01860.t01 | Wine grape | nucleus | 51.57 | 44.4 |
| CDY28337 | Canola | nucleus | 47.98 | 44.03 |
| CDX95906 | Canola | nucleus | 47.98 | 43.85 |
| CDY54628 | Canola | nucleus | 47.98 | 43.67 |
| Bra022176.1-P | Field mustard | nucleus | 47.09 | 43.39 |
| CDX92094 | Canola | nucleus | 47.09 | 43.39 |
| CDX82392 | Canola | nucleus | 47.09 | 42.86 |
| Bra001640.1-P | Field mustard | nucleus | 46.64 | 42.45 |
| AT3G16770.1 | Thale cress | nucleus | 46.64 | 41.94 |
| Solyc01g065980.2.1 | Tomato | nucleus | 44.39 | 38.98 |
| PGSC0003DMT400043311 | Potato | nucleus | 44.39 | 37.5 |
| KRG96472 | Soybean | mitochondrion | 36.77 | 37.1 |
| KRH59733 | Soybean | cytosol, mitochondrion, nucleus | 20.18 | 36.89 |
| KRH69270 | Soybean | nucleus | 40.81 | 30.33 |
| KRH31850 | Soybean | nucleus | 39.46 | 28.95 |
| TraesCS1A01G231200.1 | Wheat | nucleus | 22.87 | 28.33 |
| TraesCS1D01G230900.1 | Wheat | nucleus | 23.32 | 28.26 |
| HORVU1Hr1G058940.4 | Barley | nucleus, plastid | 23.32 | 27.96 |
| GSMUA_Achr3P08180_001 | Banana | nucleus | 24.22 | 27.41 |
| TraesCS1B01G243200.1 | Wheat | nucleus | 22.42 | 27.03 |
| Zm00001d037941_P001 | Maize | nucleus | 23.32 | 26.94 |
| KRG97290 | Soybean | nucleus | 35.43 | 26.42 |
| KRH63877 | Soybean | nucleus | 23.77 | 26.37 |
| KRH69017 | Soybean | nucleus | 39.91 | 25.8 |
| Os05t0361700-01 | Rice | nucleus | 22.87 | 25.76 |
| EES18078 | Sorghum | nucleus | 22.42 | 25.13 |
| KRH70063 | Soybean | nucleus | 24.22 | 23.68 |
| GSMUA_Achr8P22500_001 | Banana | nucleus | 26.01 | 23.58 |
| KRH50274 | Soybean | nucleus | 24.22 | 23.48 |
| KRH06265 | Soybean | nucleus | 39.46 | 23.04 |
| KRH71142 | Soybean | nucleus | 21.52 | 22.33 |
| KRH08410 | Soybean | nucleus | 23.77 | 22.18 |
| KRH47694 | Soybean | nucleus | 38.56 | 21.94 |
| KRH63879 | Soybean | nucleus | 25.56 | 21.76 |
| KRH54084 | Soybean | nucleus | 25.56 | 21.19 |
| KRH06816 | Soybean | nucleus | 24.66 | 21.15 |
| KRH35113 | Soybean | nucleus, plastid | 25.56 | 20.88 |
| KRH01504 | Soybean | nucleus | 22.42 | 20.66 |
| KRH64120 | Soybean | nucleus | 25.11 | 19.93 |
| KRG91682 | Soybean | nucleus | 24.66 | 19.71 |
| KRH45195 | Soybean | nucleus | 22.42 | 18.05 |
| KRH43369 | Soybean | nucleus | 23.77 | 17.91 |
| KRH53825 | Soybean | nucleus | 25.11 | 17.39 |
| KRG94719 | Soybean | nucleus | 25.56 | 16.72 |
| KRH59504 | Soybean | nucleus | 23.77 | 15.36 |
| KRH08660 | Soybean | nucleus | 28.25 | 13.91 |
| KRH70269 | Soybean | nucleus | 27.8 | 12.53 |
Protein Annotations
| EntrezGene:100779626 | MapMan:15.5.7.1 | Gene3D:3.30.730.10 | EMBL:ACUP02009265 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf |
| InterPro:DNA-bd_dom_sf | EnsemblPlantsGene:GLYMA_15G152000 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| UniProt:I1MGP4 | InterPro:IPR001471 | InterPro:IPR036955 | EnsemblPlants:KRH12100 | ProteinID:KRH12100 | ProteinID:KRH12100.1 |
| EMBL:KT031090 | PFAM:PF00847 | PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31190 | PANTHER:PTHR31190:SF66 |
| SMART:SM00380 | SUPFAM:SSF54171 | UniParc:UPI000233BE69 | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr15:+:12592655..12594969
Molecular Weight (calculated)
24549.9 Da
IEP (calculated)
9.465
GRAVY (calculated)
-0.720
Length
223 amino acids
Sequence
(BLAST)
(BLAST)
001: MCGGAIISDF IGVKRGRNLA AQELWSELDP FSDLLGFDTT TTTTNQPPLP DKKVVSSCEK KKKKSVSAEK KSGGRARKNV YRGIRQRPWG KWAAEIRDPH
101: KGVRVWLGTF PTAEEAARAY DDAAKRIRGD KAKLNFPATA PPPSKKQRCL SPDTTTEQSS SSQSTTGSTG SPPSAAFHGG GDELDLKQLE RFLGLDNMGA
201: EWDNMDDLWM LDDVVVPNRH LIY
101: KGVRVWLGTF PTAEEAARAY DDAAKRIRGD KAKLNFPATA PPPSKKQRCL SPDTTTEQSS SSQSTTGSTG SPPSAAFHGG GDELDLKQLE RFLGLDNMGA
201: EWDNMDDLWM LDDVVVPNRH LIY
001: MCGGAIISDY APLVTKAKGR KLTAEELWSE LDASAADDFW GFYSTSKLHP TNQVNVKEEA VKKEQATEPG KRRKRKNVYR GIRKRPWGKW AAEIRDPRKG
101: VRVWLGTFNT AEEAAMAYDV AAKQIRGDKA KLNFPDLHHP PPPNYTPPPS SPRSTDQPPA KKVCVVSQSE SELSQPSFPV ECIGFGNGDE FQNLSYGFEP
201: DYDLKQQISS LESFLELDGN TAEQPSQLDE SVSEVDMWML DDVIASYE
101: VRVWLGTFNT AEEAAMAYDV AAKQIRGDKA KLNFPDLHHP PPPNYTPPPS SPRSTDQPPA KKVCVVSQSE SELSQPSFPV ECIGFGNGDE FQNLSYGFEP
201: DYDLKQQISS LESFLELDGN TAEQPSQLDE SVSEVDMWML DDVIASYE
Arabidopsis Description
RAP2-3Ethylene-responsive transcription factor RAP2-3 [Source:UniProtKB/Swiss-Prot;Acc:P42736]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.