Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc03g082910.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G16770.1 | Solyc03g082910.2.1 | AT4G27780.1 | 15159625 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400043311 | Potato | nucleus | 92.91 | 89.39 |
| VIT_05s0077g01860.t01 | Wine grape | nucleus | 46.85 | 45.95 |
| KRH12100 | Soybean | nucleus | 38.98 | 44.39 |
| CDY34977 | Canola | nucleus | 40.94 | 43.15 |
| CDX95906 | Canola | nucleus | 40.94 | 42.62 |
| Bra021200.1-P | Field mustard | nucleus | 40.55 | 42.39 |
| AT3G16770.1 | Thale cress | nucleus | 41.34 | 42.34 |
| Bra022176.1-P | Field mustard | nucleus | 40.16 | 42.15 |
| CDX92094 | Canola | nucleus | 40.16 | 42.15 |
| CDY28337 | Canola | nucleus | 40.16 | 41.98 |
| Bra001640.1-P | Field mustard | nucleus | 38.98 | 40.41 |
| CDX82392 | Canola | nucleus | 38.98 | 40.41 |
| CDY54628 | Canola | nucleus | 38.58 | 40.0 |
| KRH37061 | Soybean | nucleus | 37.01 | 39.66 |
| Solyc09g075420.2.1 | Tomato | nucleus | 31.89 | 31.15 |
| HORVU1Hr1G058940.4 | Barley | nucleus, plastid | 21.26 | 29.03 |
| Solyc02g090800.1.1 | Tomato | nucleus | 14.96 | 29.01 |
| TraesCS1A01G231200.1 | Wheat | nucleus | 20.47 | 28.89 |
| GSMUA_Achr3P08180_001 | Banana | nucleus | 22.05 | 28.43 |
| TraesCS1D01G230900.1 | Wheat | nucleus | 20.47 | 28.26 |
| Zm00001d037941_P001 | Maize | nucleus | 21.26 | 27.98 |
| TraesCS1B01G243200.1 | Wheat | nucleus | 19.29 | 26.49 |
| Os05t0361700-01 | Rice | nucleus | 20.47 | 26.26 |
| EES18078 | Sorghum | nucleus | 20.47 | 26.13 |
| Solyc02g090770.1.1 | Tomato | nucleus | 19.68 | 24.63 |
| GSMUA_Achr8P22500_001 | Banana | nucleus | 22.83 | 23.58 |
| Solyc10g050970.1.1 | Tomato | nucleus | 20.47 | 23.32 |
| Solyc06g063070.2.1 | Tomato | nucleus | 33.86 | 23.12 |
| Solyc02g090790.1.1 | Tomato | nucleus | 19.68 | 22.03 |
| Solyc03g123500.2.1 | Tomato | nucleus | 33.46 | 22.02 |
| Solyc03g118190.2.1 | Tomato | nucleus | 20.87 | 21.72 |
| Solyc12g049560.1.1 | Tomato | nucleus | 32.68 | 21.5 |
| Solyc12g056590.1.1 | Tomato | nucleus | 24.41 | 20.0 |
| Solyc04g051360.2.1 | Tomato | nucleus | 23.23 | 19.47 |
| Solyc12g042210.1.1 | Tomato | nucleus | 21.26 | 18.82 |
| Solyc01g108240.2.1 | Tomato | nucleus | 20.87 | 17.97 |
| Solyc06g068830.1.1 | Tomato | nucleus | 19.68 | 17.3 |
| Solyc04g012050.2.1 | Tomato | nucleus | 21.65 | 13.82 |
| Solyc04g071770.2.1 | Tomato | nucleus | 24.41 | 13.72 |
Protein Annotations
| MapMan:15.5.7.1 | Gene3D:3.30.730.10 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | InterPro:DNA-bd_dom_sf | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005886 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008219 | GO:GO:0009058 |
| GO:GO:0009605 | GO:GO:0009607 | GO:GO:0009628 | GO:GO:0009719 | GO:GO:0009723 | GO:GO:0009735 |
| GO:GO:0009753 | GO:GO:0009987 | GO:GO:0010286 | GO:GO:0016020 | GO:GO:0043565 | GO:GO:0045893 |
| GO:GO:0051707 | UniProt:H6U708 | InterPro:IPR001471 | InterPro:IPR036955 | EMBL:JN616265 | PFAM:PF00847 |
| PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31190 | PANTHER:PTHR31190:SF66 | SMART:SM00380 | SUPFAM:SSF54171 |
| EnsemblPlantsGene:Solyc01g065980.2 | EnsemblPlants:Solyc01g065980.2.1 | UniParc:UPI0001D64C41 | SEG:seg | : | : |
Description
ERF6 [Source:UniProtKB/TrEMBL;Acc:H6U708]
Coordinates
chr1:-:72784546..72787001
Molecular Weight (calculated)
28287.9 Da
IEP (calculated)
5.820
GRAVY (calculated)
-0.741
Length
254 amino acids
Sequence
(BLAST)
(BLAST)
001: MCGGAIISDY DPAGSFYRKL SARDLWAELD PISDYWSSSS SSSTVGKPDS ALSPVTHSVD KPNKSDSGKK GNKTVKVEKE KSSGPRPRKN KYRGIRQRPW
101: GKWAAEIRDP QKGVRVWLGT FNTAEDAARA YDEAAKRIRG DKAKLNFPAP SPPAKRQCTS TVAAADTPPA LLLESSDNSP LMNFGYDVQY QSQTPYYPME
201: MPIVSEDYEL KEQISNLESF LELEPSDQFS GIVDSDPLNV FLMEDFASTH HQFY
101: GKWAAEIRDP QKGVRVWLGT FNTAEDAARA YDEAAKRIRG DKAKLNFPAP SPPAKRQCTS TVAAADTPPA LLLESSDNSP LMNFGYDVQY QSQTPYYPME
201: MPIVSEDYEL KEQISNLESF LELEPSDQFS GIVDSDPLNV FLMEDFASTH HQFY
001: MCGGAIISDY APLVTKAKGR KLTAEELWSE LDASAADDFW GFYSTSKLHP TNQVNVKEEA VKKEQATEPG KRRKRKNVYR GIRKRPWGKW AAEIRDPRKG
101: VRVWLGTFNT AEEAAMAYDV AAKQIRGDKA KLNFPDLHHP PPPNYTPPPS SPRSTDQPPA KKVCVVSQSE SELSQPSFPV ECIGFGNGDE FQNLSYGFEP
201: DYDLKQQISS LESFLELDGN TAEQPSQLDE SVSEVDMWML DDVIASYE
101: VRVWLGTFNT AEEAAMAYDV AAKQIRGDKA KLNFPDLHHP PPPNYTPPPS SPRSTDQPPA KKVCVVSQSE SELSQPSFPV ECIGFGNGDE FQNLSYGFEP
201: DYDLKQQISS LESFLELDGN TAEQPSQLDE SVSEVDMWML DDVIASYE
Arabidopsis Description
RAP2-3Ethylene-responsive transcription factor RAP2-3 [Source:UniProtKB/Swiss-Prot;Acc:P42736]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.