Factsheet for Solyc04g071770.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 30146417

gfp PMID: 30146417 doi

Z Li, Y Tian, J Xu, X Fu, J Gao, B Wang, H Han, L Wang, R Peng, Q Yao

Shanghai Key Laboratory of Agricultural Genetics and Breeding, Agro-Biotechnology Research Institute, Shanghai Academy of Agricultural Sciences, 2901 Beidi Rd, Shanghai, 201106, PR China., Shanghai Key Laboratory of Agricultural Genetics and Breeding, Agro-Biotechnology Research Institute, Shanghai Academy of Agricultural Sciences, 2901 Beidi Rd, Shanghai, 201106, PR China. Electronic address: qhyao_saas@163.com., Shanghai Key Laboratory of Agricultural Genetics and Breeding, Agro-Biotechnology Research Institute, Shanghai Academy of Agricultural Sciences, 2901 Beidi Rd, Shanghai, 201106, PR China. Electronic address: rpeng_saas@163.com.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400016306	Potato	nucleus	91.15	93.42
Solyc12g056590.1.1	Tomato	nucleus	44.03	64.19
VIT_18s0072g00260.t01	Wine grape	nucleus	40.93	39.11
Solyc02g090800.1.1	Tomato	nucleus	10.84	37.4
Solyc04g051360.2.1	Tomato	nucleus	22.57	33.66
Solyc10g050970.1.1	Tomato	nucleus	15.71	31.84
Solyc03g118190.2.1	Tomato	nucleus	17.04	31.56
Solyc12g042210.1.1	Tomato	nucleus	19.25	30.31
Solyc02g090770.1.1	Tomato	nucleus	13.27	29.56
Solyc02g090790.1.1	Tomato	nucleus	14.16	28.19
GSMUA_Achr10P...	Banana	nucleus	17.7	27.21
Solyc01g108240.2.1	Tomato	nucleus	17.7	27.12
Solyc06g068830.1.1	Tomato	nucleus	16.81	26.3
Solyc04g012050.2.1	Tomato	nucleus	23.01	26.13
Solyc01g065980.2.1	Tomato	nucleus	13.72	24.41
Solyc09g075420.2.1	Tomato	nucleus	12.83	22.31
Solyc06g063070.2.1	Tomato	nucleus	15.27	18.55
Solyc03g123500.2.1	Tomato	nucleus	14.16	16.58
Solyc12g049560.1.1	Tomato	nucleus	13.5	15.8

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	UniProt:K4BTG7
PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31190	PANTHER:PTHR31190:SF59	SMART:SM00380
SUPFAM:SSF54171	EnsemblPlantsGene:Solyc04g071770.2	EnsemblPlants:Solyc04g071770.2.1	UniParc:UPI0002766A20	SEG:seg	:

Description

No Description!

Coordinates

chr4:+:58745579..58747295

Molecular Weight (calculated)

49585.4 Da

IEP (calculated)

6.524

GRAVY (calculated)

-0.862

Length

452 amino acids

Sequence
(BLAST)

001: MCILKVANQG DSGKYDRIPS TAGDSETTTN EGIPQPYEQS QSFEEMLQQQ IQQETEYLMS ESANPMYTGY SQSRDMSAMV TALTHVVSGR REAEWGYRPD
101: ISGVTTSFGG GGSGSIYSAN SPSSSSSGSW AGQKRRRDQE ESVTGEQAQR GYGGIGEFKN GESSSSVKLE EDTSLATPQT SSISTTTASQ TPPQASEVTG
201: EETGERKRRY RGVRQRPWGK WAAEIRDPHK AARVWLGTFD TAEAAAKAYD DAALRFRGNR AKLNFPENVR LLPQQQQQPT TRLAISTSSS TAAPRFQLMS
301: AASTRSPSPS PFFFQSYNQP PRQSDQQHQN QQQQLFQSSD MARDYWEYSQ LLQNPIDFHG GQQSSSLLEQ MLLASSLGVL HSHTFPSSSS SSLATSAASS
401: TTSPAYPLFY SAQQSRFFQP QTHQNQSNSS SNSSNFPPPF WTSSGHYPPS SS

Best Arabidopsis Sequence Match ( AT5G64750.1 )
(BLAST)

001: MCVLKVANQE DNVGKKAESI RDDDHRTLSE IDQWLYLFAA EDDHHRHSFP TQQPPPSSSS SSLISGFSRE MEMSAIVSAL THVVAGNVPQ HQQGGGEGSG
101: EGTSNSSSSS GQKRRREVEE GGAKAVKAAN TLTVDQYFSG GSSTSKVREA SSNMSGPGPT YEYTTTATAS SETSSFSGDQ PRRRYRGVRQ RPWGKWAAEI
201: RDPFKAARVW LGTFDNAESA ARAYDEAALR FRGNKAKLNF PENVKLVRPA STEAQPVHQT AAQRPTQSRN SGSTTTLLPI RPASNQSVHS QPLMQSYNLS
301: YSEMARQQQQ FQQHHQQSLD LYDQMSFPLR FGHTGGSMMQ STSSSSSHSR PLFSPAAVQP PPESASETGY LQDIQWPSDK TSNNYNNSPS S

Arabidopsis Description

ABR1Ethylene-responsive transcription factor ABR1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FGF8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.