Factsheet for Solyc12g056590.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400048407	Potato	nucleus	88.39	69.37
Solyc04g071770.2.1	Tomato	nucleus	64.19	44.03
AT5G50080.2	Thale cress	nucleus	26.13	35.37
Solyc02g090800.1.1	Tomato	nucleus	14.84	35.11
Solyc04g051360.2.1	Tomato	nucleus	30.32	31.02
Solyc03g118190.2.1	Tomato	nucleus	24.19	30.74
Solyc10g050970.1.1	Tomato	nucleus	21.94	30.49
Solyc02g090770.1.1	Tomato	nucleus	19.03	29.06
KRH08660	Soybean	nucleus	41.94	28.7
Solyc12g042210.1.1	Tomato	nucleus	25.81	27.87
Solyc02g090790.1.1	Tomato	nucleus	19.68	26.87
GSMUA_Achr10P...	Banana	nucleus	25.48	26.87
KRH70269	Soybean	nucleus	42.9	26.87
Solyc01g108240.2.1	Tomato	nucleus	23.87	25.08
Solyc01g065980.2.1	Tomato	nucleus	20.0	24.41
Solyc06g068830.1.1	Tomato	nucleus	22.26	23.88
Solyc09g075420.2.1	Tomato	nucleus	18.39	21.92
Solyc04g012050.2.1	Tomato	nucleus	27.74	21.61
Solyc06g063070.2.1	Tomato	nucleus	20.0	16.67
Solyc03g123500.2.1	Tomato	nucleus	18.39	14.77
Solyc12g049560.1.1	Tomato	nucleus	18.06	14.51

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	UniProt:K4DFZ0
PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31190	PANTHER:PTHR31190:SF59	SMART:SM00380
SUPFAM:SSF54171	EnsemblPlantsGene:Solyc12g056590.1	EnsemblPlants:Solyc12g056590.1.1	UniParc:UPI000276A03E	SEG:seg	:

Description

No Description!

Coordinates

chr12:+:62549007..62550542

Molecular Weight (calculated)

33762.6 Da

IEP (calculated)

8.374

GRAVY (calculated)

-0.632

Length

310 amino acids

Sequence
(BLAST)

001: MSEMVTEFTR VVSGQDYRPD TRCYSVNSPS PAYSSSSSGS RAGLKRSRDQ QEFGTGLSSS SSVKIEEATS MVAPIPAFTT TITTTTTTGE GSSEETGGDR
101: RRKYRGVRQR PWGKWAAEIR DPHKAARVWL GTFDTAEAAA RAYDEAALRF RGNRAKLNFP ENARLSSLPQ TQNTVTSTIS NPSPLIAQPT SFLNPIQSSD
201: TTRDYWEYSQ LLQNPGDFTD QQPSNLLEQM FVASSMAMLH SNTLPLISSS SSLATSATSS TSYPLLFSSY YTPQTNQIQG TNTSSTSTTS SSSFSTTFWS
301: SSSQYPPSSS

Best Arabidopsis Sequence Match ( AT5G50080.2 )
(BLAST)

001: MSAMVSALTQ VVSARSQTEA EGAHSQTEAE GAHSSSSSAG HKRGWLGIDS APIPSSFARV DSSHNPIEES MSKAFPEEAR EKKRRYRGVR QRPWGKWAAE
101: IRDPHRAARV WLGTFDTAEA AARAYDEAAL RFRGNKAKLN FPEDVRILPP PPPLLRSPAD TVANKAEEDL INYWSYTKLL QSSGQRSFLE RGQEESSNIF
201: EHSPMEQPLP PSSSGPSSSN FPAPSLPNT

Arabidopsis Description

ERF110Ethylene response factor 110 [Source:UniProtKB/TrEMBL;Acc:G8IQH2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.