Factsheet for Solyc12g042210.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g118190.2.1	Tomato	nucleus	49.83	58.61
Solyc06g068830.1.1	Tomato	nucleus	48.78	48.44
KRH70063	Soybean	nucleus	27.87	35.09
KRH08410	Soybean	nucleus	28.22	33.89
Solyc02g090800.1.1	Tomato	nucleus	14.98	32.82
Solyc02g090770.1.1	Tomato	nucleus	19.51	27.59
Solyc12g056590.1.1	Tomato	nucleus	27.87	25.81
Solyc10g050970.1.1	Tomato	nucleus	19.86	25.56
Solyc04g051360.2.1	Tomato	nucleus	25.78	24.42
Solyc02g090790.1.1	Tomato	nucleus	18.47	23.35
Solyc01g065980.2.1	Tomato	nucleus	18.82	21.26
Solyc09g075420.2.1	Tomato	nucleus	19.16	21.15
Solyc01g108240.2.1	Tomato	nucleus	20.21	19.66
Solyc04g071770.2.1	Tomato	nucleus	30.31	19.25
Solyc04g012050.2.1	Tomato	nucleus	26.48	19.1
Solyc06g063070.2.1	Tomato	nucleus	20.21	15.59
Solyc03g123500.2.1	Tomato	nucleus	20.56	15.29
Solyc12g049560.1.1	Tomato	nucleus	18.47	13.73

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	UniProt:K4DF15
PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31190	PANTHER:PTHR31190:SF41	SMART:SM00380
SUPFAM:SSF54171	EnsemblPlantsGene:Solyc12g042210.1	EnsemblPlants:Solyc12g042210.1.1	UniParc:UPI000276A99F	SEG:seg	:

Description

No Description!

Coordinates

chr12:-:40618424..40619747

Molecular Weight (calculated)

33339.3 Da

IEP (calculated)

7.529

GRAVY (calculated)

-1.108

Length

287 amino acids

Sequence
(BLAST)

001: MVDRRYGKRP FSSNEWEEKE DINFPIYSAR SQHDMSAMVS VLSQVISNTN NTTNISSSSS MHEIDPLTLP QPTTNQIHEQ GNQQRKRHYR GVRQRPWGKW
101: AAEIRDPKKA ARVWLGTFDT AEAAALAYDE AALRFKGNKA KLNFPERVQS GNTQYLTTTH QQQQQHYAFN NNNNNIPQMV TQPNLYQQHF PNVHHYAQLL
201: RDGSNNNIDN MMNFGVSDQS SFYHHHQQGN FISPNTSLEL QQQQQQASYY HNQQEDFLRY TMDFGNSSNY STGPPSESNW MDFEPKK

Best Arabidopsis Sequence Match ( AT5G61890.1 )
(BLAST)

001: MYGKRPFGGD ESEEREEDEN LFPVFSARSQ HDMRVMVSAL TQVIGNQQSK SHDNISSIDD NYPSVYNPQD PNQQVAPTHQ DQGDLRRRHY RGVRQRPWGK
101: WAAEIRDPKK AARVWLGTFE TAESAALAYD EAALKFKGSK AKLNFPERVQ LGSNSTYYSS NQIPQMEPQS IPNYNQYYHD ASSGDMLSFN LGGGYGSGTG
201: YSMSHDNSTT TAATTSSSSG GSSRQQEEQD YARFWRFGDS SSSPHSGY

Arabidopsis Description

ERF114Ethylene-responsive transcription factor ERF114 [Source:UniProtKB/Swiss-Prot;Acc:Q9FH54]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.