Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400011537 | Potato | mitochondrion, nucleus | 72.91 | 79.14 |
| Solyc02g090800.1.1 | Tomato | nucleus | 43.35 | 67.18 |
| Solyc02g090790.1.1 | Tomato | nucleus | 66.01 | 59.03 |
| VIT_07s0031g00710.t01 | Wine grape | nucleus | 29.06 | 31.72 |
| Solyc10g050970.1.1 | Tomato | nucleus | 32.02 | 29.15 |
| VIT_07s0031g00720.t01 | Wine grape | nucleus | 29.56 | 27.91 |
| Solyc03g118190.2.1 | Tomato | nucleus | 28.08 | 23.36 |
| Solyc01g108240.2.1 | Tomato | nucleus | 32.02 | 22.03 |
| Solyc04g051360.2.1 | Tomato | nucleus | 32.02 | 21.45 |
| Solyc01g065980.2.1 | Tomato | nucleus | 24.63 | 19.68 |
| Solyc12g042210.1.1 | Tomato | nucleus | 27.59 | 19.51 |
| Solyc06g068830.1.1 | Tomato | nucleus | 27.59 | 19.38 |
| Solyc12g056590.1.1 | Tomato | nucleus | 29.06 | 19.03 |
| Solyc09g075420.2.1 | Tomato | nucleus | 24.14 | 18.85 |
| Solyc04g012050.2.1 | Tomato | nucleus | 29.06 | 14.82 |
| Solyc06g063070.2.1 | Tomato | nucleus | 26.11 | 14.25 |
| Solyc12g049560.1.1 | Tomato | nucleus | 26.11 | 13.73 |
| Solyc04g071770.2.1 | Tomato | nucleus | 29.56 | 13.27 |
| Solyc03g123500.2.1 | Tomato | nucleus | 24.14 | 12.69 |
Protein Annotations
| MapMan:15.5.7.1 | Gene3D:3.30.730.10 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | InterPro:DNA-bd_dom_sf | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR001471 | InterPro:IPR036955 | UniProt:K4BCM6 |
| PFAM:PF00847 | PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31190 | PANTHER:PTHR31190:SF66 | SMART:SM00380 |
| SUPFAM:SSF54171 | EnsemblPlantsGene:Solyc02g090770.1 | EnsemblPlants:Solyc02g090770.1.1 | UniParc:UPI00027675F6 | SEG:seg | : |
Description
No Description!
Coordinates
chr2:-:52280739..52281350
Molecular Weight (calculated)
23459.3 Da
IEP (calculated)
7.099
GRAVY (calculated)
-1.028
Length
203 amino acids
Sequence
(BLAST)
(BLAST)
001: MDNLSSFTHK LTHQQESHYM VSALKHVFSG AAVDGRADGE AAQLLWEVEN AATSDNSMPR RSINVHPVHV ELELGKKKQR RRRNTKKEFR GVRQRPWGKW
101: AAEIRDPHKA QRLWLGTFVT AEDAARAYDK KAVEFRGNKA KTNFPLKEYI DDHDNSSPMM KVEEHENDQN VMNGDENNNN GDDFWATLED DRLVKFITQD
201: MSH
101: AAEIRDPHKA QRLWLGTFVT AEDAARAYDK KAVEFRGNKA KTNFPLKEYI DDHDNSSPMM KVEEHENDQN VMNGDENNNN GDDFWATLED DRLVKFITQD
201: MSH
001: MHSGKRPLSP ESMAGNREEK KELCCCSTLS ESDVSDFVSE LTGQPIPSSI DDQSSSLTLQ EKSNSRQRNY RGVRQRPWGK WAAEIRDPNK AARVWLGTFD
101: TAEEAALAYD KAAFEFRGHK AKLNFPEHIR VNPTQLYPSP ATSHDRIIVT PPSPPPPIAP DILLDQYGHF QSRSSDSSAN LSMNMLSSSS SSLNHQGLRP
201: NLEDGENVMT TISTEDDRRR QQHASPDRPI K
101: TAEEAALAYD KAAFEFRGHK AKLNFPEHIR VNPTQLYPSP ATSHDRIIVT PPSPPPPIAP DILLDQYGHF QSRSSDSSAN LSMNMLSSSS SSLNHQGLRP
201: NLEDGENVMT TISTEDDRRR QQHASPDRPI K
Arabidopsis Description
Integrase-type DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IFX1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.