Factsheet for PGSC0003DMT400011537

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

mitochondrion: 24351685

msms PMID: 24351685 doi

F Salvato, JF Havelund, M Chen, RS Rao, A Rogowska-Wrzesinska, ON Jensen, DR Gang, JJ Thelen, IM Møller

Department of Biochemistry and Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri 65211.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g090770.1.1	Tomato	nucleus	79.14	72.91
PGSC0003DMT400010296	Potato	nucleus	67.91	62.56
PGSC0003DMT400010297	Potato	nucleus	63.64	59.8
PGSC0003DMT400021312	Potato	nucleus, plastid	27.81	33.77
PGSC0003DMT400021311	Potato	nucleus	26.74	32.26
VIT_07s0031g00710.t01	Wine grape	nucleus	30.48	30.65
VIT_07s0031g00720.t01	Wine grape	nucleus	32.09	27.91
PGSC0003DMT400065732	Potato	nucleus	31.55	25.65
PGSC0003DMT400066343	Potato	nucleus	32.62	20.68
PGSC0003DMT400036934	Potato	nucleus	29.95	20.29
PGSC0003DMT400043311	Potato	nucleus	27.81	19.7
PGSC0003DMT400081322	Potato	nucleus	27.27	18.35
PGSC0003DMT400060659	Potato	nucleus	33.16	18.29
PGSC0003DMT400050718	Potato	nucleus	35.29	16.67
PGSC0003DMT400048407	Potato	nucleus	32.62	15.44
PGSC0003DMT400074248	Potato	nucleus	29.41	14.18
PGSC0003DMT400012547	Potato	nucleus	27.27	13.71
PGSC0003DMT400016306	Potato	nucleus	31.55	13.38
PGSC0003DMT400023609	Potato	nucleus	27.81	13.33

Protein Annotations

EntrezGene:107059299	Gene3D:3.30.730.10	MapMan:35.1	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955
UniProt:M0ZZQ0	PFAM:PF00847	EnsemblPlantsGene:PGSC0003DMG400004538	PGSC:PGSC0003DMG400004538	EnsemblPlants:PGSC0003DMT400011537	PRINTS:PR00367
PFscan:PS51032	PANTHER:PTHR31190	PANTHER:PTHR31190:SF66	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI000294EA06
RefSeq:XP_015161294.1	SEG:seg	:	:	:	:

Description

AP2 domain class transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400004538]

Coordinates

chr2:-:42849989..42850552

Molecular Weight (calculated)

21018.4 Da

IEP (calculated)

5.159

GRAVY (calculated)

-0.785

Length

187 amino acids

Sequence
(BLAST)

001: MVSALKHVFS GAAADGRADG EAAKLLWEVQ NAATSDNSMP RNVDDTVSLE SGKKKRRRRN TKKEFRGVRQ RPWGKWAAEI RDPHKAQRLW LGTFITAEDA
101: ARAYDIKAVE FRGRKAKTNF PLKEYIDADN STSPIVIVED DDQNGNEVAV ATDQDNNGEN SMDIGDDFWA TLEDDRLVKF ITQDMSL

Best Arabidopsis Sequence Match ( AT2G33710.1 )
(BLAST)

001: MHSGKRPLSP ESMAGNREEK KELCCCSTLS ESDVSDFVSE LTGQPIPSSI DDQSSSLTLQ EKSNSRQRNY RGVRQRPWGK WAAEIRDPNK AARVWLGTFD
101: TAEEAALAYD KAAFEFRGHK AKLNFPEHIR VNPTQLYPSP ATSHDRIIVT PPSPPPPIAP DILLDQYGHF QSRSSDSSAN LSMNMLSSSS SSLNHQGLRP
201: NLEDGENVKN ISIHKRRK

Arabidopsis Description

Integrase-type DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IFX1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.