Factsheet for PGSC0003DMT400081322

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	plastid
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g075420.2.1	Tomato	nucleus	85.25	91.15
KRG96472	Soybean	mitochondrion	42.09	52.94
GSMUA_Achr11P...	Banana	nucleus	37.77	52.76
GSMUA_Achr3P08170_001	Banana	nucleus	34.53	52.17
GSMUA_AchrUn_...	Banana	nucleus	39.57	50.93
KRH69270	Soybean	nucleus	51.8	48.0
VIT_07s0005g00820.t01	Wine grape	nucleus	44.6	47.88
KRH31850	Soybean	nucleus	52.16	47.7
GSMUA_AchrUn_...	Banana	nucleus	32.37	38.46
PGSC0003DMT400043311	Potato	nucleus	29.5	31.06
PGSC0003DMT400021312	Potato	nucleus, plastid	16.91	30.52
PGSC0003DMT400012547	Potato	nucleus	39.57	29.57
PGSC0003DMT400021311	Potato	nucleus	15.47	27.74
PGSC0003DMT400011537	Potato	mitochondrion, nucleus	18.35	27.27
PGSC0003DMT400023609	Potato	nucleus	37.77	26.92
PGSC0003DMT400074248	Potato	nucleus	35.25	25.26
PGSC0003DMT400010296	Potato	nucleus	17.99	24.63
PGSC0003DMT400010297	Potato	nucleus	17.27	24.12
PGSC0003DMT400065732	Potato	nucleus	18.7	22.61
PGSC0003DMT400036934	Potato	nucleus	19.78	19.93
PGSC0003DMT400066343	Potato	nucleus	19.78	18.64
PGSC0003DMT400060659	Potato	nucleus	19.78	16.22
PGSC0003DMT400048407	Potato	nucleus	21.22	14.94
PGSC0003DMT400050718	Potato	nucleus	21.22	14.9
PGSC0003DMT400016306	Potato	nucleus	20.14	12.7

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	ProteinID:AAC29516	ProteinID:AAC29516.1	ProteinID:ADD82936	ProteinID:ADD82936.1
ProteinID:ADD82937	ProteinID:ADD82937.1	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	ncoils:Coil	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EMBL:GU587743	EMBL:GU587744
InterPro:IPR001471	InterPro:IPR036955	UniProt:M1D4K4	PFAM:PF00847	EnsemblPlantsGene:PGSC0003DMG400031795	PGSC:PGSC0003DMG400031795
EnsemblPlants:PGSC0003DMT400081322	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31190	PANTHER:PTHR31190:SF77	SMART:SM00380
SUPFAM:SSF54171	EMBL:U77655	UniParc:UPI000294A651	SEG:seg	:	:

Description

DNA binding protein homolog [Source:PGSC_GENE;Acc:PGSC0003DMG400031795]

Coordinates

chr9:+:52914833..52916048

Molecular Weight (calculated)

31715.6 Da

IEP (calculated)

4.824

GRAVY (calculated)

-0.905

Length

278 amino acids

Sequence
(BLAST)

001: MCGGAILYDI IPRDRRLSST DLWPSSADFW QTSSFSKPIS TQNVPPKPKR AQLSRGSEQM KKRQRKNLYR GIRQRPWGKW AAEIRDPRKG VRVWLGTFNT
101: AEEAARAYDR EARKIRGKKA KVNFPNEDDD HYYSHPEPPC ESYDTTSTYN QESNNCYPFY SIENTEPVME FAIANKNSSG SAYNGIEDQN VEGEEQTVKN
201: SNNRIVEEEE KTEDEVQILS DELMAYESLM KFYEIPYVDG QSVAATVNPA AETAVGGGSM ELWSFDDVSR LQPSYNVV

Best Arabidopsis Sequence Match ( AT3G16770.1 )
(BLAST)

001: MCGGAIISDY APLVTKAKGR KLTAEELWSE LDASAADDFW GFYSTSKLHP TNQVNVKEEA VKKEQATEPG KRRKRKNVYR GIRKRPWGKW AAEIRDPRKG
101: VRVWLGTFNT AEEAAMAYDV AAKQIRGDKA KLNFPDLHHP PPPNYTPPPS SPRSTDQPPA KKVCVVSQSE SELSQPSFPV ECIGFGNGDE FQNLSYGFEP
201: DYDLKQQISS LESFLELDGN TAEQPSQLDE SVSEVDMWML DDVIASYE

Arabidopsis Description

RAP2-3Ethylene-responsive transcription factor RAP2-3 [Source:UniProtKB/Swiss-Prot;Acc:P42736]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.