Factsheet for PGSC0003DMT400066343

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g108240.2.1	Tomato	nucleus	94.58	94.58
PGSC0003DMT400021312	Potato	nucleus, plastid	34.24	65.58
PGSC0003DMT400021311	Potato	nucleus	33.22	63.23
VIT_03s0063g00460.t01	Wine grape	nucleus	41.36	49.39
GSMUA_Achr7P18930_001	Banana	nucleus	21.69	46.04
KRH50274	Soybean	nucleus	34.58	44.35
KRH71142	Soybean	nucleus	31.19	42.79
Bra034624.1-P	Field mustard	nucleus	23.73	41.42
CDX72481	Canola	nucleus	35.25	40.31
CDY45310	Canola	nucleus	34.92	39.46
CDX69054	Canola	nucleus	35.25	39.39
Bra011529.1-P	Field mustard	nucleus	34.58	38.93
CDX75430	Canola	nucleus	34.58	38.93
GSMUA_Achr6P02310_001	Banana	nucleus	25.76	38.38
Bra017656.1-P	Field mustard	nucleus	34.92	38.15
AT4G34410.1	Thale cress	nucleus	34.58	38.06
CDY46253	Canola	nucleus	33.22	37.55
CDX69056	Canola	nucleus	25.76	37.25
CDX76278	Canola	nucleus	33.22	36.98
TraesCS1A01G370600.1	Wheat	nucleus	30.17	34.77
GSMUA_Achr3P06960_001	Banana	nucleus	27.46	34.47
TraesCS1B01G389700.1	Wheat	nucleus	29.15	34.26
TraesCS1D01G376800.1	Wheat	nucleus	30.85	34.08
TraesCS1B01G389800.1	Wheat	nucleus	29.49	33.59
TraesCS1A01G370700.1	Wheat	nucleus	29.83	33.21
TraesCS1B01G389900.1	Wheat	nucleus	29.83	32.96
HORVU1Hr1G082310.1	Barley	nucleus	29.49	32.95
Os08t0474000-01	Rice	nucleus	24.41	32.88
TraesCS1D01G376600.1	Wheat	nucleus	29.49	32.83
TraesCS5A01G238400.1	Wheat	nucleus	26.78	32.78
TraesCS1D01G376700.1	Wheat	nucleus	29.49	32.71
PGSC0003DMT400011537	Potato	mitochondrion, nucleus	20.68	32.62
TraesCS5B01G236900.1	Wheat	nucleus	26.44	32.23
TraesCS1D01G376500.1	Wheat	nucleus	29.49	32.1
Zm00001d031796_P001	Maize	nucleus	29.15	31.97
TraesCS1A01G370400.1	Wheat	nucleus	28.14	31.92
TraesCS5D01G245300.1	Wheat	nucleus	26.1	31.3
PGSC0003DMT400010297	Potato	nucleus	21.02	31.16
OQU80635	Sorghum	nucleus	30.17	30.48
Os09t0457900-01	Rice	nucleus	28.14	30.29
Zm00001d005892_P001	Maize	nucleus	26.78	30.04
PGSC0003DMT400010296	Potato	nucleus	20.34	29.56
HORVU5Hr1G068450.1	Barley	nucleus	26.78	29.48
EER96855	Sorghum	mitochondrion, nucleus	29.15	29.25
PGSC0003DMT400065732	Potato	nucleus	18.64	23.91
PGSC0003DMT400043311	Potato	nucleus	18.64	20.83
PGSC0003DMT400036934	Potato	nucleus	18.98	20.29
PGSC0003DMT400081322	Potato	nucleus	18.64	19.78
PGSC0003DMT400048407	Potato	nucleus	26.1	19.49
PGSC0003DMT400060659	Potato	nucleus	22.03	19.17
PGSC0003DMT400016306	Potato	nucleus	26.44	17.69
PGSC0003DMT400050718	Potato	nucleus	23.73	17.68
PGSC0003DMT400012547	Potato	nucleus	19.32	15.32
PGSC0003DMT400023609	Potato	nucleus	18.64	14.1
PGSC0003DMT400074248	Potato	nucleus	17.97	13.66

Protein Annotations

EntrezGene:102598046	MapMan:15.5.7.1	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955
UniProt:M1CFE5	PFAM:PF00847	EnsemblPlantsGene:PGSC0003DMG400025797	PGSC:PGSC0003DMG400025797	EnsemblPlants:PGSC0003DMT400066343	PRINTS:PR00367
PFscan:PS51032	PANTHER:PTHR31190	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI000296FB0E	RefSeq:XP_006346432.1
SEG:seg	:	:	:	:	:

Description

Wound-responsive AP2 like factor 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400025797]

Coordinates

chr1:+:84659395..84660407

Molecular Weight (calculated)

32625.5 Da

IEP (calculated)

6.530

GRAVY (calculated)

-0.730

Length

295 amino acids

Sequence
(BLAST)

001: MHWLNKRFRP TSNLNSNSLQ NNNQFQQQQP RLTGDEEYSV MVATLKNVIN GNIPVQNNQE FNVFSPYNYS TATTTTTTTT VTSSSSPSTS MSTSFEQVLG
101: VPAEQEPCQF CRIQGCLGCD IFGTTFSSSS SSAPAAVAAP IADNKKKGSS TTTVAIAKKK KKNYRGVRQR PWGKWAAEIR DPRKAARVWL GTFTTAEEAA
201: RAYDKAAIEF RGPRAKLNFS FADYTVDTQE QQSTLSSSPQ QLPEEPQQSQ TANNNSDFGN EIWDQLMGDN EIQDWLTMMN FNGDSSDSGG NVHSF

Best Arabidopsis Sequence Match ( AT4G34410.1 )
(BLAST)

001: MHYPNNRTEF VGAPAPTRYQ KEQLSPEQEL SVIVSALQHV ISGENETAPC QGFSSDSTVI SAGMPRLDSD TCQVCRIEGC LGCNYFFAPN QRIEKNHQQE
101: EEITSSSNRR RESSPVAKKA EGGGKIRKRK NKKNGYRGVR QRPWGKFAAE IRDPKRATRV WLGTFETAED AARAYDRAAI GFRGPRAKLN FPFVDYTSSV
201: SSPVAADDIG AKASASASVS ATDSVEAEQW NGGGGDCNME EWMNMMMMMD FGNGDSSDSG NTIADMFQ

Arabidopsis Description

ERF109Ethylene-responsive transcription factor ERF109 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZ06]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.