Factsheet for VIT_03s0063g00460.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400021311	Potato	nucleus	34.01	54.19
PGSC0003DMT400021312	Potato	nucleus, plastid	30.77	49.35
KRH50274	Soybean	nucleus	45.75	49.13
KRH71142	Soybean	nucleus	40.08	46.05
Solyc10g050970.1.1	Tomato	nucleus	40.49	44.84
GSMUA_Achr7P18930_001	Banana	nucleus	24.7	43.88
VIT_07s0031g00710.t01	Wine grape	nucleus	31.58	41.94
PGSC0003DMT400066343	Potato	nucleus	49.39	41.36
Solyc01g108240.2.1	Tomato	nucleus	48.58	40.68
CDX72481	Canola	nucleus	41.7	39.92
GSMUA_Achr6P02310_001	Banana	nucleus	31.58	39.39
CDY45310	Canola	nucleus	40.89	38.7
Bra034624.1-P	Field mustard	nucleus	26.32	38.46
AT4G34410.1	Thale cress	nucleus	41.3	38.06
CDY46253	Canola	nucleus	39.68	37.55
Bra011529.1-P	Field mustard	nucleus	39.68	37.4
CDX75430	Canola	nucleus	39.68	37.4
CDX69054	Canola	nucleus	39.68	37.12
Bra017656.1-P	Field mustard	nucleus	40.49	37.04
CDX69056	Canola	nucleus	29.96	36.27
CDX76278	Canola	nucleus	38.87	36.23
GSMUA_Achr3P06960_001	Banana	nucleus	34.01	35.74
VIT_07s0031g00720.t01	Wine grape	nucleus	30.36	34.88
TraesCS5A01G238400.1	Wheat	nucleus	34.01	34.85
TraesCS5B01G236900.1	Wheat	nucleus	34.01	34.71
TraesCS1D01G376800.1	Wheat	nucleus	36.84	34.08
TraesCS1A01G370600.1	Wheat	nucleus	35.22	33.98
TraesCS5D01G245300.1	Wheat	nucleus	33.6	33.74
TraesCS1A01G370700.1	Wheat	nucleus	36.03	33.58
TraesCS1B01G389700.1	Wheat	nucleus	34.01	33.47
TraesCS1A01G370400.1	Wheat	nucleus	35.22	33.46
TraesCS1B01G389900.1	Wheat	nucleus	36.03	33.33
TraesCS1D01G376600.1	Wheat	nucleus	35.63	33.21
Zm00001d005892_P001	Maize	nucleus	35.22	33.08
Zm00001d031796_P001	Maize	nucleus	35.63	32.71
Os08t0474000-01	Rice	nucleus	28.74	32.42
HORVU1Hr1G082310.1	Barley	nucleus	34.01	31.82
TraesCS1B01G389800.1	Wheat	nucleus	33.2	31.66
OQU80635	Sorghum	nucleus	37.25	31.51
TraesCS1D01G376500.1	Wheat	nucleus	34.41	31.37
HORVU5Hr1G068450.1	Barley	nucleus	34.01	31.34
TraesCS1D01G376700.1	Wheat	nucleus	33.6	31.2
EER96855	Sorghum	mitochondrion, nucleus	36.84	30.95
Os09t0457900-01	Rice	nucleus	33.6	30.29
VIT_17s0000g00200.t01	Wine grape	nucleus	24.7	24.8
VIT_01s0150g00120.t01	Wine grape	nucleus, plastid	22.67	23.63
VIT_07s0031g01980.t01	Wine grape	nucleus	27.53	19.32
VIT_07s0005g00820.t01	Wine grape	nucleus	19.84	18.92
VIT_14s0068g01040.t01	Wine grape	nucleus	23.89	18.32
VIT_05s0077g01860.t01	Wine grape	nucleus	18.62	17.76
VIT_18s0072g00260.t01	Wine grape	nucleus	29.96	15.64
VIT_09s0002g00470.t01	Wine grape	nucleus	22.27	14.51

Protein Annotations

EntrezGene:100260566	wikigene:100260566	MapMan:15.5.7.1	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
ProteinID:CCB56870	ProteinID:CCB56870.1	InterPro:DNA-bd_dom_sf	UniProt:F6HQB3	EMBL:FN596006	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	EntrezGene:LOC100260566
wikigene:LOC100260566	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31190	SMART:SM00380
SUPFAM:SSF54171	TIGR:TC71022	UniParc:UPI00015C8CF1	ArrayExpress:VIT_03s0063g00460	EnsemblPlantsGene:VIT_03s0063g00460	EnsemblPlants:VIT_03s0063g00460.t01
RefSeq:XP_002282169	RefSeq:XP_002282169.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr3:+:4022554..4023532

Molecular Weight (calculated)

27099.6 Da

IEP (calculated)

7.345

GRAVY (calculated)

-0.626

Length

247 amino acids

Sequence
(BLAST)

001: MQQRTPKRQK HASAPLSAGE TASLQSPPQR LTPEQEGAII VAALKTVISG GDAQDFRLFP SSMDCATTST DVHGNAFLPI SDPEPCQFCK IKGCLGCNFF
101: QEDSKSVSVA TTTKKKKKNY RGVRQRPWGK WAAEIRDPRR AARVWLGTFD TAEAAARAYD KAAIDFRGPR AKLNFPFPDN TLLTQNTVET EQPLQENQGN
201: SEFLAQTGDI NENGFWEMIG NDQWMTMVGF TGGDSSDSAT TGNAHSF

Best Arabidopsis Sequence Match ( AT4G34410.1 )
(BLAST)

001: MHYPNNRTEF VGAPAPTRYQ KEQLSPEQEL SVIVSALQHV ISGENETAPC QGFSSDSTVI SAGMPRLDSD TCQVCRIEGC LGCNYFFAPN QRIEKNHQQE
101: EEITSSSNRR RESSPVAKKA EGGGKIRKRK NKKNGYRGVR QRPWGKFAAE IRDPKRATRV WLGTFETAED AARAYDRAAI GFRGPRAKLN FPFVDYTSSV
201: SSPVAADDIG AKASASASVS ATDSVEAEQW NGGGGDCNME EWMNMMMMMD FGNGDSSDSG NTIADMFQ

Arabidopsis Description

ERF109Ethylene-responsive transcription factor ERF109 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZ06]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.