Factsheet for VIT_14s0068g01040.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_01s0150g00120.t01	Wine grape	nucleus, plastid	24.53	33.33
VIT_17s0000g00200.t01	Wine grape	nucleus	25.16	32.93
Zm00001d016616_P001	Maize	nucleus	25.78	32.55
KRH06816	Soybean	nucleus	26.09	32.31
Zm00001d031673_P001	Maize	nucleus	18.63	30.93
TraesCS7B01G162100.1	Wheat	plastid	20.5	29.46
TraesCS7D01G265000.1	Wheat	plastid	20.5	29.46
TraesCS7A01G264100.1	Wheat	plastid	20.5	29.07
VIT_07s0031g00720.t01	Wine grape	nucleus	18.01	26.98
VIT_07s0031g00710.t01	Wine grape	nucleus	14.91	25.81
KRG94719	Soybean	nucleus	27.02	25.51
OQU85019	Sorghum	nucleus	22.05	24.32
VIT_03s0063g00460.t01	Wine grape	nucleus	18.32	23.89
VIT_05s0077g01860.t01	Wine grape	nucleus	18.63	23.17
OQU80805	Sorghum	nucleus	20.5	21.93
VIT_07s0031g01980.t01	Wine grape	nucleus	23.91	21.88
VIT_07s0005g00820.t01	Wine grape	nucleus	17.39	21.62
VIT_18s0072g00260.t01	Wine grape	nucleus	25.47	17.34
VIT_09s0002g00470.t01	Wine grape	nucleus	20.19	17.15

Protein Annotations

EntrezGene:100266913	wikigene:100266913	MapMan:15.5.7.1	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
ProteinID:CCB46969	ProteinID:CCB46969.1	InterPro:DNA-bd_dom_sf	UniProt:F6H426	EMBL:FN595232	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	EntrezGene:LOC100266913
wikigene:LOC100266913	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31190	PANTHER:PTHR31190:SF58
SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI000210A67F	ArrayExpress:VIT_14s0068g01040	EnsemblPlantsGene:VIT_14s0068g01040	EnsemblPlants:VIT_14s0068g01040.t01
unigene:Vvi.25614	RefSeq:XP_002275870	RefSeq:XP_002275870.2	SEG:seg	:	:

Description

No Description!

Coordinates

chr14:-:24814759..24818030

Molecular Weight (calculated)

35240.6 Da

IEP (calculated)

7.439

GRAVY (calculated)

-0.903

Length

322 amino acids

Sequence
(BLAST)

001: MKDSTQSKFG CVQDQLKKQE REPANPGVLK VDHKHGKRSV PSGASEEKEE DPIFPVYPAA QSQRDTSAMI SAFADHQDIG SWDNRLAHGY HGQGSLLAAS
101: VSSMRQHGLS QPPQDRGREG SARKRHYRGV RQRPWGKWAA EIRDPKKAAR VWLGTFDTAE AAAAAYDAAA LNFKGTKAKL NFPERVQGGS HSHSHSPSPS
201: HYSRPITVPP PSPPPPPPPP PPPQPYSPSP PFAPPFPVQE EFPNLLQYAQ LLCSNTDDDL SNATSALYDQ QTFASQGLSN PSAVSQQHRQ VEEELLRVSS
301: DMGSSYGTDF FGQGRDFDNS NP

Best Arabidopsis Sequence Match ( AT5G13330.1 )
(BLAST)

001: MVSALSRVIE NPTDPPVKQE LDKSDQHQPD QDQPRRRHYR GVRQRPWGKW AAEIRDPKKA ARVWLGTFET AEEAALAYDR AALKFKGTKA KLNFPERVQG
101: PTTTTTISHA PRGVSESMNS PPPRPGPPST TTTSWPMTYN QDILQYAQLL TSNNEVDLSY YTSTLFSQPF STPSSSSSSS QQTQQQQLQQ QQQQREEEEK
201: NYGYNYYNYP RE

Arabidopsis Description

ERF113Rap2.6L [Source:UniProtKB/TrEMBL;Acc:A0A178UKL8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.