Factsheet for VIT_18s0072g00260.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400016306	Potato	nucleus	38.69	41.5
Solyc04g071770.2.1	Tomato	nucleus	39.11	40.93
VIT_01s0150g00120.t01	Wine grape	nucleus, plastid	19.87	39.66
VIT_07s0031g01980.t01	Wine grape	nucleus	28.12	37.78
VIT_17s0000g00200.t01	Wine grape	nucleus	18.6	35.77
VIT_07s0031g00710.t01	Wine grape	nucleus	13.11	33.33
GSMUA_Achr10P...	Banana	nucleus	19.45	31.29
VIT_07s0031g00720.t01	Wine grape	nucleus	13.74	30.23
VIT_03s0063g00460.t01	Wine grape	nucleus	15.64	29.96
VIT_14s0068g01040.t01	Wine grape	nucleus	17.34	25.47
VIT_07s0005g00820.t01	Wine grape	nucleus	13.32	24.32
VIT_05s0077g01860.t01	Wine grape	nucleus	12.69	23.17
VIT_09s0002g00470.t01	Wine grape	nucleus	14.59	18.21

Protein Annotations

EntrezGene:100262406	wikigene:100262406	MapMan:15.5.7.1	Gene3D:3.30.730.10	EMBL:AM471378	InterPro:AP2/ERF_dom
InterPro:AP2/ERF_dom_sf	ProteinID:CAN66025	ProteinID:CAN66025.1	ProteinID:CCB44890	ProteinID:CCB44890.1	InterPro:DNA-bd_dom_sf
UniProt:F6GY54	EMBL:FN594968	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR001471	InterPro:IPR036955	EntrezGene:LOC100262406	wikigene:LOC100262406	PFAM:PF00847	PRINTS:PR00367
PFscan:PS51032	PANTHER:PTHR31190	PANTHER:PTHR31190:SF59	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI000210869E
ArrayExpress:VIT_18s0072g00260	EnsemblPlantsGene:VIT_18s0072g00260	EnsemblPlants:VIT_18s0072g00260.t01	RefSeq:XP_002264797	RefSeq:XP_002264797.2	SEG:seg

Description

No Description!

Coordinates

chr18:-:19427010..19431008

Molecular Weight (calculated)

50675.2 Da

IEP (calculated)

6.685

GRAVY (calculated)

-0.532

Length

473 amino acids

Sequence
(BLAST)

001: MSRKGVTPQY PFESSIGLYS RWFTELSEGL AFRIESEYLY LDQRCSTGCV VYMCKLKVAN PRDSGEYVRF RAAGGGNEEV VPPPPQQSEE PVPVVSETMY
101: SGYSRASEMS AMVSALTHVV SGQRAGDYGY ASGFVGAAGG VTSSFGSGGS GIYTSSSPLS AYSSSSGSGS ASGSASWVGQ KRGRELEAAT QYSETVPRVY
201: RGFGDFRVSH SESSSGATGT EETTNMLPPT TAIPATPSTE PASNQESGER RRRYRGVRQR PWGKWAAEIR DPHKAARVWL GTFDTAEAAA RAYDEAALRF
301: RGNRAKLNFP ENVRLMPPLQ VSPATQLSIS GPPATQLPVS SSPPPFFQGQ ALQNPDIVRD YWEYSQLLQS SGDFHGQQPT SLLEQMFYSQ SLASLQSSAS
401: LSSPSISFSS SSSSSSTSSL SSRFSSSSTP YPLLFPEQQM GYPQPPGNQG QGSSSDFPAP SWTGSGHYPS SSS

Best Arabidopsis Sequence Match ( AT2G33710.1 )
(BLAST)

001: MHSGKRPLSP ESMAGNREEK KELCCCSTLS ESDVSDFVSE LTGQPIPSSI DDQSSSLTLQ EKSNSRQRNY RGVRQRPWGK WAAEIRDPNK AARVWLGTFD
101: TAEEAALAYD KAAFEFRGHK AKLNFPEHIR VNPTQLYPSP ATSHDRIIVT PPSPPPPIAP DILLDQYGHF QSRSSDSSAN LSMNMLSSSS SSLNHQGLRP
201: NLEDGENVKN ISIHKRRK

Arabidopsis Description

Integrase-type DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IFX1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.