Factsheet for VIT_05s0077g01860.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_12s0028g02240.t01
VIT_16s0098g01570.t01
VIT_18s0001g09830.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G16770.1	VIT_12s0028g02240.t01	AT2G42580.1	19000166
AT3G16770.1	VIT_18s0001g09830.t01	AT2G42580.1	19000166
AT3G16770.1	VIT_16s0098g01570.t01	AT4G27780.1	15159625

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH12100	Soybean	nucleus	44.4	51.57
KRH37061	Soybean	nucleus	44.02	48.1
CDX82392	Canola	nucleus	44.4	46.94
CDY34977	Canola	nucleus	43.63	46.89
Solyc01g065980.2.1	Tomato	nucleus	45.95	46.85
AT3G16770.1	Thale cress	nucleus	44.79	46.77
Bra022176.1-P	Field mustard	nucleus	43.63	46.69
CDX92094	Canola	nucleus	43.63	46.69
CDY54628	Canola	nucleus	44.02	46.53
CDX95906	Canola	nucleus	43.63	46.31
Bra001640.1-P	Field mustard	nucleus	43.63	46.12
CDY28337	Canola	nucleus	43.24	46.09
Bra021200.1-P	Field mustard	nucleus	43.24	46.09
PGSC0003DMT400043311	Potato	nucleus	45.56	44.7
VIT_07s0005g00820.t01	Wine grape	nucleus	30.89	30.89
TraesCS1A01G231200.1	Wheat	nucleus	21.24	30.56
TraesCS1D01G230900.1	Wheat	nucleus	20.85	29.35
HORVU1Hr1G058940.4	Barley	nucleus, plastid	20.85	29.03
TraesCS1B01G243200.1	Wheat	nucleus	20.46	28.65
GSMUA_Achr3P08180_001	Banana	nucleus	21.62	28.43
Zm00001d037941_P001	Maize	nucleus	20.85	27.98
Os05t0361700-01	Rice	nucleus	20.85	27.27
EES18078	Sorghum	nucleus	20.46	26.63
VIT_07s0031g00710.t01	Wine grape	nucleus	18.15	25.27
GSMUA_Achr8P22500_001	Banana	nucleus	22.39	23.58
VIT_17s0000g00200.t01	Wine grape	nucleus	22.39	23.58
VIT_09s0002g00470.t01	Wine grape	nucleus	33.98	23.22
VIT_01s0150g00120.t01	Wine grape	nucleus, plastid	20.85	22.78
VIT_07s0031g00720.t01	Wine grape	nucleus	18.53	22.33
VIT_14s0068g01040.t01	Wine grape	nucleus	23.17	18.63
VIT_03s0063g00460.t01	Wine grape	nucleus	17.76	18.62
VIT_07s0031g01980.t01	Wine grape	nucleus	22.01	16.19
VIT_18s0072g00260.t01	Wine grape	nucleus	23.17	12.69

Protein Annotations

EntrezGene:100249982	wikigene:100249982	MapMan:15.5.7.1	Gene3D:3.30.730.10	EMBL:AM430323	InterPro:AP2/ERF_dom
InterPro:AP2/ERF_dom_sf	ProteinID:CAN69221	ProteinID:CAN69221.1	ProteinID:CBI22960	ProteinID:CBI22960.3	UniProt:D7SYA3
InterPro:DNA-bd_dom_sf	EMBL:FN595246	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR001471	InterPro:IPR036955	EntrezGene:LOC100249982	wikigene:LOC100249982	PFAM:PF00847	PRINTS:PR00367
PFscan:PS51032	PANTHER:PTHR31190	PANTHER:PTHR31190:SF66	SMART:SM00380	SUPFAM:SSF54171	TIGR:TC65735
UniParc:UPI00015CB940	ArrayExpress:VIT_05s0077g01860	EnsemblPlantsGene:VIT_05s0077g01860	EnsemblPlants:VIT_05s0077g01860.t01	unigene:Vvi.17249	RefSeq:XP_002272426
RefSeq:XP_002272426.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr5:-:1463190..1464371

Molecular Weight (calculated)

28786.8 Da

IEP (calculated)

7.198

GRAVY (calculated)

-0.738

Length

259 amino acids

Sequence
(BLAST)

001: MCGGAIISGF IAAKRGRKLT KEDLWSELDT ISDLLGLDSA NGGDDFNPSE NRVAPKPKQV SKGTNENTQK AIRVEEKKST TTPRIRKNVY RGIRQRPWGK
101: WAAEIRDPHK GVRVWLGTYN TAEEAARAYD EAAKRIRGDK AKLNFADPSS PHFPPPIPLP PSKRRCVVPD PTAQSSYQPT VPPPPLMTYP APYENEAASE
201: LEFKEQISSL ESLLGLEPEQ AATQLNEITE SDSVDLWMLE DLASTHPHHH RQHVCSAAF

Best Arabidopsis Sequence Match ( AT3G16770.1 )
(BLAST)

001: MCGGAIISDY APLVTKAKGR KLTAEELWSE LDASAADDFW GFYSTSKLHP TNQVNVKEEA VKKEQATEPG KRRKRKNVYR GIRKRPWGKW AAEIRDPRKG
101: VRVWLGTFNT AEEAAMAYDV AAKQIRGDKA KLNFPDLHHP PPPNYTPPPS SPRSTDQPPA KKVCVVSQSE SELSQPSFPV ECIGFGNGDE FQNLSYGFEP
201: DYDLKQQISS LESFLELDGN TAEQPSQLDE SVSEVDMWML DDVIASYE

Arabidopsis Description

RAP2-3Ethylene-responsive transcription factor RAP2-3 [Source:UniProtKB/Swiss-Prot;Acc:P42736]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.