Factsheet for VIT_16s0098g01570.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, vacuole, plasma membrane

Predictor Summary:

nucleus 2
peroxisome 1
extracellular 4
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane, vacuole
Any Predictor:	nucleus, peroxisome, secretory
BaCelLo:	nucleus
EpiLoc:	peroxisome
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_03s0038g02440.t01
VIT_05s0077g01860.t01
VIT_06s0080g00970.t01
VIT_09s0054g00530.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G27780.1	VIT_05s0077g01860.t01	AT3G16770.1	15159625
AT4G27780.1	VIT_09s0054g00530.t01	AT3G21150.1	21798944
AT4G27780.1	VIT_03s0038g02440.t01	AT4G38580.1	18823312
AT5G53470.1	VIT_06s0080g00970.t01	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH53542	Soybean	endoplasmic reticulum	67.52	66.95
KRH64393	Soybean	endoplasmic reticulum	65.81	66.76
AT5G53470.1	Thale cress	endoplasmic reticulum	62.11	64.5
Solyc03g082910.2.1	Tomato	nucleus	62.11	63.01
GSMUA_Achr4P05400_001	Banana	cytosol	49.29	62.68
CDY19024	Canola	endoplasmic reticulum	60.4	62.54
PGSC0003DMT400047661	Potato	endoplasmic reticulum	61.82	62.36
CDY62840	Canola	endoplasmic reticulum	59.83	61.95
Bra022656.1-P	Field mustard	endoplasmic reticulum	59.54	61.29
CDY49168	Canola	endoplasmic reticulum	59.54	61.11
AT4G27780.1	Thale cress	endoplasmic reticulum	61.54	61.02
GSMUA_Achr4P04370_001	Banana	golgi, plasma membrane	58.4	60.65
CDX89227	Canola	endoplasmic reticulum	60.4	60.23
Bra026307.1-P	Field mustard	endoplasmic reticulum	59.54	57.42
Bra019027.1-P	Field mustard	endoplasmic reticulum	40.74	56.75
CDY29860	Canola	endoplasmic reticulum	40.46	56.35
TraesCS2D01G600500.1	Wheat	endoplasmic reticulum	51.0	55.59
TraesCS2A01G586100.1	Wheat	endoplasmic reticulum	51.0	55.59
Zm00001d001798_P002	Maize	plastid	51.0	54.57
TraesCS2B01G596900.1	Wheat	endoplasmic reticulum	49.29	54.06
Zm00001d026639_P002	Maize	plasma membrane	50.43	53.96
EES13117	Sorghum	endoplasmic reticulum	50.43	52.99
CDX92839	Canola	endoplasmic reticulum	24.79	52.1
KXG37573	Sorghum	cytosol	20.23	50.35
HORVU0Hr1G005790.3	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	31.91	47.46
VIT_18s0001g09340.t01	Wine grape	endoplasmic reticulum, vacuole	17.66	19.81
VIT_07s0129g00430.t01	Wine grape	endoplasmic reticulum, vacuole	17.66	13.78
VIT_14s0006g03110.t01	Wine grape	endoplasmic reticulum, extracellular	3.7	9.49

Protein Annotations

Gene3D:1.20.80.10	Gene3D:1.25.40.20	EntrezGene:100262327	MapMan:35.1	InterPro:Acyl-CoA-binding_protein	InterPro:Acyl-CoA-binding_sf
InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	ProteinID:CBI23035	ProteinID:CBI23035.3	UniProt:E0CV74
InterPro:FERM/acyl-CoA-bd_prot_sf	EMBL:FN595247	GO:GO:0000062	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:IPR000582	InterPro:IPR002110	InterPro:IPR014352
InterPro:IPR020683	InterPro:IPR036770	EntrezGene:LOC100262327	PFAM:PF00887	PFAM:PF12796	PRINTS:PR00689
PRINTS:PR01415	PFscan:PS50088	PFscan:PS50297	PFscan:PS51228	PANTHER:PTHR24119	PANTHER:PTHR24119:SF0
SMART:SM00248	SUPFAM:SSF47027	SUPFAM:SSF48403	TIGR:TC64200	TMHMM:TMhelix	UniParc:UPI00015CB8B3
ArrayExpress:VIT_16s0098g01570	EnsemblPlantsGene:VIT_16s0098g01570	EnsemblPlants:VIT_16s0098g01570.t01	RefSeq:XP_010662896.1	SEG:seg	:

Description

No Description!

Coordinates

chr16:+:21733789..21737586

Molecular Weight (calculated)

37861.8 Da

IEP (calculated)

4.139

GRAVY (calculated)

-0.404

Length

351 amino acids

Sequence
(BLAST)

001: MEGEWQQLIQ SVFFGLVFSY LFAKLISIVI SFRDENLSLT RDSKPESQGG AASADDDSAG SQKSGGSEGE ESLLAEKGSG SSGSLLDDDD DWEGVESTEL
101: DEEFSAATAF VAATAADRLS QKVSNDVQLQ LYGLYKIATE GPCSAPQPSA LKMTARAKWQ AWQKLGAMPP EEAMQKYIAI VTELYPTWAT GSTNKSKDEG
201: GSSAPSGDAK GPMGPVFSTF VYEEECGTEL KMDAIHAFAR EGEVDNLLKC IDNGVSVDLK DSEGRTPLHW AVDRGHLNLT ELLLNHGADV NAKDHEGQSP
301: LHYAVVCERE AIAEFLVKQN ADINAMDNDG ASPFELCESN WPWMQGAAKQ A

Best Arabidopsis Sequence Match ( AT4G27780.1 )
(BLAST)

001: MGDWAQLAQS VILGLIFSYL LAKLISIVVT FKEDNLSLTR HPEESQLEIK PEGVDSRRLD SSCGGFGGEA DSLVAEQGSS RSDSVAGDDS EEDDDWEGVE
101: STELDEAFSA ATLFVTTAAA DRLSQKVPSD VQQQLYGLYK IATEGPCTAP QPSALKMTAR AKWQAWQKLG AMPPEEAMEK YIEIVTQLYP TWLDGGVKAG
201: SRGGDDAASN SRGTMGPVFS SLVYDEESEN ELKIDAIHGF AREGEVENLL KSIESGIPVN ARDSEGRTPL HWAIDRGHLN IAKVLVDKNA DVNAKDNEGQ
301: TPLHYAVVCD REAIAEFLVK QNANTAAKDE DGNSPLDLCE SDWPWIRDSA KQAD

Arabidopsis Description

ACBP2AtACBP2 [Source:UniProtKB/TrEMBL;Acc:A0A178V3N7]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.