Factsheet for Zm00001d001798_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 4
endoplasmic reticulum 6
vacuole 4
plasma membrane 4
golgi 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	cytosol

plastid: 22065420

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d004138_P001
Zm00001d027720_P001
Zm00001d034978_P001
Zm00001d052760_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G27780.1	Zm00001d004138_P001	AT4G38580.1	18823312
AT4G27780.1	Zm00001d027720_P001	AT4G38580.1	18823312
AT4G27780.1	Zm00001d034978_P001	AT4G38580.1	18823312
AT4G27780.1	Zm00001d052760_P001	AT4G38580.1	18823312

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d026639_P002	Maize	plasma membrane	88.72	88.72
KXG37573	Sorghum	cytosol	35.06	81.56
TraesCS2D01G600500.1	Wheat	endoplasmic reticulum	75.91	77.33
TraesCS2A01G586100.1	Wheat	endoplasmic reticulum	75.0	76.4
TraesCS2B01G596900.1	Wheat	endoplasmic reticulum	73.17	75.0
HORVU0Hr1G005790.3	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	46.34	64.41
GSMUA_Achr4P05400_001	Banana	cytosol	47.26	56.16
GSMUA_Achr4P04370_001	Banana	golgi, plasma membrane	57.01	55.33
AT5G53470.1	Thale cress	endoplasmic reticulum	55.79	54.14
CDY62840	Canola	endoplasmic reticulum	55.18	53.39
Bra022656.1-P	Field mustard	endoplasmic reticulum	54.57	52.49
CDY49168	Canola	endoplasmic reticulum	54.27	52.05
Solyc03g082910.2.1	Tomato	nucleus	54.57	51.73
PGSC0003DMT400047661	Potato	endoplasmic reticulum	54.57	51.44
CDY19024	Canola	endoplasmic reticulum	52.74	51.03
VIT_16s0098g01570.t01	Wine grape	endoplasmic reticulum, plasma membrane, vacuole	54.57	51.0
KRH64393	Soybean	endoplasmic reticulum	53.35	50.58
KRH53542	Soybean	endoplasmic reticulum	53.66	49.72
AT4G27780.1	Thale cress	endoplasmic reticulum	53.05	49.15
CDX92839	Canola	endoplasmic reticulum	25.0	49.1
CDX89227	Canola	endoplasmic reticulum	52.13	48.58
Bra026307.1-P	Field mustard	endoplasmic reticulum	51.22	46.15
CDY29860	Canola	endoplasmic reticulum	34.45	44.84
Bra019027.1-P	Field mustard	endoplasmic reticulum	34.45	44.84
Zm00001d015957_P001	Maize	plastid	12.2	13.03
Zm00001d028397_P001	Maize	endoplasmic reticulum, plasma membrane	16.46	9.93

Protein Annotations

Gene3D:1.20.80.10	Gene3D:1.25.40.20	EntrezGene:100282403	MapMan:35.1	InterPro:Acyl-CoA-binding_protein	InterPro:Acyl-CoA-binding_sf
InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	EMBL:BT064964	UniProt:C0P9J5	InterPro:FERM/acyl-CoA-bd_prot_sf
GO:GO:0000062	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:IPR000582	InterPro:IPR002110	InterPro:IPR014352	InterPro:IPR020683	InterPro:IPR036770
ProteinID:ONM12010.1	PFAM:PF00887	PFAM:PF12796	PRINTS:PR00689	PFscan:PS50088	PFscan:PS50297
PFscan:PS51228	PANTHER:PTHR24119	PANTHER:PTHR24119:SF0	SMART:SM00248	SUPFAM:SSF47027	SUPFAM:SSF48403
TMHMM:TMhelix	UniParc:UPI000194B10A	EnsemblPlantsGene:Zm00001d001798	EnsemblPlants:Zm00001d001798_P002	EnsemblPlants:Zm00001d001798_T002	SEG:seg

Description

minichromosome instability12b minichromosome instability12b

Coordinates

chr2:+:1081766..1084209

Molecular Weight (calculated)

34794.3 Da

IEP (calculated)

4.343

GRAVY (calculated)

-0.280

Length

328 amino acids

Sequence
(BLAST)

001: MAGDWQELGQ AAAIGLLFAF LVAKLISTVI AFKEDNLRIT RSPPTSPTAA AAAAAPPVPS HYGSTDGGSG SDSDWEGVES TELDEEFSAA SAFIAASAAS
101: GTSVPEEAQL RLYGLYKIAT EGPCTAPQPS ALKLKARAKW NAWHKLGAMP TEEAMQGYIT IVQDLFPNWD AGASAKRKDE DSIASASASK GPMGPVFSSL
201: MYEEDEGNES ELGDIHVSAR EGATDDIVKL LAAGVEVNVR DTEGRSPLHW AVDRGHLSAV EVLANANADL NAKDNEGQTA LHYAAVCERE DIAELLVKHH
301: ADLRIKDEDG NTAHDLCPSS WSFMNQAN

Best Arabidopsis Sequence Match ( AT5G53470.1 )
(BLAST)

001: MADWYQLAQS IIFGLIFAYL LAKLISILLA FKDENLSLTR NHTTQSEYEN LRKVETLTGI SGETDSLIAE QGSLRGDEDE SDDDDWEGVE STELDEAFSA
101: ATAFVAAAAS DRLSQKVSNE LQLQLYGLYK IATEGPCTAP QPSALKMTAR AKWQAWQKLG AMPPEEAMEK YIDLVTQLYP AWVEGGSKRR NRSGEAAGPM
201: GPVFSSLVYE EESDNELKID AIHAFAREGE VENLLKCIEN GIPVNARDSE GRTPLHWAID RGHLNVAEAL VDKNADVNAK DNEGQTSLHY AVVCEREALA
301: EFLVKQKADT TIKDEDGNSP LDLCESEWSW MREKKDSN

Arabidopsis Description

ACBP1Acyl-CoA-binding domain-containing protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SM23]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.