Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 4
- endoplasmic reticulum 6
- vacuole 5
- plasma membrane 4
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G53470.1 | CDX70995 | AT5G22290.1 | 21798944 |
| AT5G53470.1 | CDX88803 | AT5G22290.1 | 21798944 |
| AT5G53470.1 | CDX92368 | AT5G22290.1 | 21798944 |
| AT5G53470.1 | CDY09128 | AT5G22290.1 | 21798944 |
| AT5G53470.1 | CDY35676 | AT5G22290.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra022656.1-P | Field mustard | endoplasmic reticulum | 97.66 | 97.95 |
| CDY62840 | Canola | endoplasmic reticulum | 92.69 | 93.51 |
| AT5G53470.1 | Thale cress | endoplasmic reticulum | 83.92 | 84.91 |
| CDX89227 | Canola | endoplasmic reticulum | 73.98 | 71.88 |
| CDY19024 | Canola | endoplasmic reticulum | 69.88 | 70.5 |
| CDY29860 | Canola | endoplasmic reticulum | 44.74 | 60.71 |
| VIT_16s0098g01570.t01 | Wine grape | endoplasmic reticulum, plasma membrane, vacuole | 61.11 | 59.54 |
| GSMUA_Achr4P05400_001 | Banana | cytosol | 47.37 | 58.7 |
| KRH64393 | Soybean | endoplasmic reticulum | 58.48 | 57.8 |
| Solyc03g082910.2.1 | Tomato | nucleus | 58.19 | 57.51 |
| PGSC0003DMT400047661 | Potato | endoplasmic reticulum | 58.48 | 57.47 |
| KRH53542 | Soybean | endoplasmic reticulum | 58.48 | 56.5 |
| GSMUA_Achr4P04370_001 | Banana | golgi, plasma membrane | 54.97 | 55.62 |
| TraesCS2D01G600500.1 | Wheat | endoplasmic reticulum | 52.34 | 55.59 |
| TraesCS2A01G586100.1 | Wheat | endoplasmic reticulum | 52.05 | 55.28 |
| TraesCS2B01G596900.1 | Wheat | endoplasmic reticulum | 51.46 | 55.0 |
| EES13117 | Sorghum | endoplasmic reticulum | 53.22 | 54.49 |
| Zm00001d026639_P002 | Maize | plasma membrane | 52.05 | 54.27 |
| Zm00001d001798_P002 | Maize | plastid | 52.05 | 54.27 |
| CDX92839 | Canola | endoplasmic reticulum | 25.73 | 52.69 |
| KXG37573 | Sorghum | cytosol | 19.88 | 48.23 |
| HORVU0Hr1G005790.3 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 31.29 | 45.34 |
| CDX92624 | Canola | endoplasmic reticulum, vacuole | 17.25 | 16.34 |
| CDY10995 | Canola | endoplasmic reticulum, golgi | 16.96 | 16.02 |
| CDY03471 | Canola | vacuole | 16.67 | 15.36 |
| CDY34268 | Canola | endoplasmic reticulum, vacuole | 16.96 | 15.22 |
Protein Annotations
| Gene3D:1.20.80.10 | Gene3D:1.25.40.20 | MapMan:35.1 | GO:A0A078IJB7 | UniProt:A0A078IJB7 | InterPro:Acyl-CoA-binding_protein |
| InterPro:Acyl-CoA-binding_sf | InterPro:Ankyrin_rpt | InterPro:Ankyrin_rpt-contain_dom | InterPro:Ankyrin_rpt-contain_sf | EnsemblPlants:CDY49168 | ProteinID:CDY49168 |
| ProteinID:CDY49168.1 | InterPro:FERM/acyl-CoA-bd_prot_sf | GO:GO:0000062 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | EnsemblPlantsGene:GSBRNA2T00092510001 | InterPro:IPR000582 | InterPro:IPR002110 |
| InterPro:IPR014352 | InterPro:IPR020683 | InterPro:IPR036770 | PFAM:PF00887 | PFAM:PF13637 | PIRSF:PIRSF000654 |
| PRINTS:PR00689 | PRINTS:PR01415 | PFscan:PS50088 | PFscan:PS50297 | PFscan:PS51228 | PANTHER:PTHR24119 |
| PANTHER:PTHR24119:SF0 | SMART:SM00248 | SUPFAM:SSF47027 | SUPFAM:SSF48403 | TMHMM:TMhelix | UniParc:UPI0004EE3B14 |
| SEG:seg | : | : | : | : | : |
Description
BnaA02g10270DBnaA02g10270D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IJB7]
Coordinates
chrLK032815:-:12606..14825
Molecular Weight (calculated)
37628.6 Da
IEP (calculated)
4.289
GRAVY (calculated)
-0.449
Length
342 amino acids
Sequence
(BLAST)
(BLAST)
001: MGVDWFQLAQ SLIFGLIFAY LLAKLISILV AFKDDNLSLT RSHDAARSEN EYYRKVDSSA GETDSLVAEQ GSLRGDEDDD DEEDWEGVES TELDEAFSAA
101: TAFVAAAASD RLSQKVSSEL QLQLYGLYKI ATEGACTAPQ PSALKMTARA KWQAWQKMGA MPAEEAMEKY IDLVTHLYPA WVEGGSKGRN RSGDAAGSSS
201: RAPMGPVFSS LVYEEESENE LKIDAVHAFA REGEVENLLK CIESGIPVNA RDSEGRTPLH WAIDRGHLNV AKALVDNKAD VNAKDNEGQT ALHYAVVCER
301: EALAEFLVKQ KADTSIKDED GNSPLDLCES EWSWMREKKD SD
101: TAFVAAAASD RLSQKVSSEL QLQLYGLYKI ATEGACTAPQ PSALKMTARA KWQAWQKMGA MPAEEAMEKY IDLVTHLYPA WVEGGSKGRN RSGDAAGSSS
201: RAPMGPVFSS LVYEEESENE LKIDAVHAFA REGEVENLLK CIESGIPVNA RDSEGRTPLH WAIDRGHLNV AKALVDNKAD VNAKDNEGQT ALHYAVVCER
301: EALAEFLVKQ KADTSIKDED GNSPLDLCES EWSWMREKKD SD
001: MADWYQLAQS IIFGLIFAYL LAKLISILLA FKDENLSLTR NHTTQSEYEN LRKVETLTGI SGETDSLIAE QGSLRGDEDE SDDDDWEGVE STELDEAFSA
101: ATAFVAAAAS DRLSQKVSNE LQLQLYGLYK IATEGPCTAP QPSALKMTAR AKWQAWQKLG AMPPEEAMEK YIDLVTQLYP AWVEGGSKRR NRSGEAAGPM
201: GPVFSSLVYE EESDNELKID AIHAFAREGE VENLLKCIEN GIPVNARDSE GRTPLHWAID RGHLNVAEAL VDKNADVNAK DNEGQTSLHY AVVCEREALA
301: EFLVKQKADT TIKDEDGNSP LDLCESEWSW MREKKDSN
101: ATAFVAAAAS DRLSQKVSNE LQLQLYGLYK IATEGPCTAP QPSALKMTAR AKWQAWQKLG AMPPEEAMEK YIDLVTQLYP AWVEGGSKRR NRSGEAAGPM
201: GPVFSSLVYE EESDNELKID AIHAFAREGE VENLLKCIEN GIPVNARDSE GRTPLHWAID RGHLNVAEAL VDKNADVNAK DNEGQTSLHY AVVCEREALA
301: EFLVKQKADT TIKDEDGNSP LDLCESEWSW MREKKDSN
Arabidopsis Description
ACBP1Acyl-CoA-binding domain-containing protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SM23]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.