Factsheet for HORVU0Hr1G005790.3

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, cytosol, plasma membrane, golgi

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, secretory
Any Predictor:	cytosol, plastid, secretory
iPSORT:	secretory
MultiLoc:	cytosol
Predotar:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU2Hr1G011060.1
HORVU3Hr1G049780.1
HORVU5Hr1G069380.2
HORVU6Hr1G009000.1
HORVU7Hr1G090970.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G27780.1	HORVU2Hr1G011060.1	AT4G38580.1	18823312
AT4G27780.1	HORVU3Hr1G049780.1	AT4G38580.1	18823312
AT4G27780.1	HORVU5Hr1G069380.2	AT4G38580.1	18823312
AT4G27780.1	HORVU6Hr1G009000.1	AT4G38580.1	18823312
AT4G27780.1	HORVU7Hr1G090970.1	AT4G38580.1	18823312

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG37573	Sorghum	cytosol	37.71	63.12
TraesCS2D01G600500.1	Wheat	endoplasmic reticulum	81.36	59.63
TraesCS2A01G586100.1	Wheat	endoplasmic reticulum	81.36	59.63
TraesCS2B01G596900.1	Wheat	endoplasmic reticulum	80.08	59.06
Zm00001d026639_P002	Maize	plasma membrane	64.83	46.65
EES13117	Sorghum	endoplasmic reticulum	65.68	46.41
Zm00001d001798_P002	Maize	plastid	64.41	46.34
GSMUA_Achr4P05400_001	Banana	cytosol	44.92	38.41
GSMUA_Achr4P04370_001	Banana	golgi, plasma membrane	50.0	34.91
AT5G53470.1	Thale cress	endoplasmic reticulum	46.61	32.54
KRH64393	Soybean	endoplasmic reticulum	47.46	32.37
KRH53542	Soybean	endoplasmic reticulum	48.31	32.2
CDY19024	Canola	endoplasmic reticulum	46.19	32.15
Solyc03g082910.2.1	Tomato	nucleus	47.03	32.08
VIT_16s0098g01570.t01	Wine grape	endoplasmic reticulum, plasma membrane, vacuole	47.46	31.91
CDY62840	Canola	endoplasmic reticulum	45.34	31.56
Bra022656.1-P	Field mustard	endoplasmic reticulum	45.34	31.38
PGSC0003DMT400047661	Potato	endoplasmic reticulum	46.19	31.32
CDY49168	Canola	endoplasmic reticulum	45.34	31.29
AT4G27780.1	Thale cress	endoplasmic reticulum	46.61	31.07
CDX89227	Canola	endoplasmic reticulum	46.19	30.97
Bra026307.1-P	Field mustard	endoplasmic reticulum	44.92	29.12
CDX92839	Canola	endoplasmic reticulum	17.37	24.55
Bra019027.1-P	Field mustard	endoplasmic reticulum	25.42	23.81
CDY29860	Canola	endoplasmic reticulum	25.42	23.81
HORVU4Hr1G063810.1	Barley	endoplasmic reticulum	11.86	5.25

Protein Annotations

Gene3D:1.20.80.10	Gene3D:1.25.40.20	MapMan:35.1	UniProt:A0A287DWI9	InterPro:Acyl-CoA-binding_protein	InterPro:Acyl-CoA-binding_sf
InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	InterPro:FERM/acyl-CoA-bd_prot_sf	GO:GO:0000062	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:HORVU0Hr1G005790
EnsemblPlants:HORVU0Hr1G005790.3	InterPro:IPR000582	InterPro:IPR002110	InterPro:IPR014352	InterPro:IPR020683	InterPro:IPR036770
PFAM:PF12796	PFscan:PS50088	PFscan:PS50297	PFscan:PS51228	PANTHER:PTHR24119	PANTHER:PTHR24119:SF0
SMART:SM00248	SUPFAM:SSF47027	SUPFAM:SSF48403	TMHMM:TMhelix	UniParc:UPI000B46E97E	:

Description

No Description!

Coordinates

chrchrUn:+:31221411..31222885

Molecular Weight (calculated)

26191.8 Da

IEP (calculated)

4.350

GRAVY (calculated)

-0.226

Length

236 amino acids

Sequence
(BLAST)

001: MGTRSQMFTV CIEHILAVDL YVFFLCMCFS VWTVNPVYQV SLLIEHLFAR NAWNKLGAMP TEEAMEEYIT IVDEIFPNWA DGSKKKDGET TMSASGSKGP
101: MGPVFSSLMY EEDQGNESEL GDIHVSAREG AIDDVKKHLA AGVQINIRDS EERTPLHWAV DRGHLDAVEV LVSSNADVNA QDNEGQTALH YAVLCEREDI
201: AELLVKHHAD LQIKDGDGNT AQDLCSSSWP FMKPAN

Best Arabidopsis Sequence Match ( AT5G53470.1 )
(BLAST)

001: MADWYQLAQS IIFGLIFAYL LAKLISILLA FKDENLSLTR NHTTQSEYEN LRKVETLTGI SGETDSLIAE QGSLRGDEDE SDDDDWEGVE STELDEAFSA
101: ATAFVAAAAS DRLSQKVSNE LQLQLYGLYK IATEGPCTAP QPSALKMTAR AKWQAWQKLG AMPPEEAMEK YIDLVTQLYP AWVEGGSKRR NRSGEAAGPM
201: GPVFSSLVYE EESDNELKID AIHAFAREGE VENLLKCIEN GIPVNARDSE GRTPLHWAID RGHLNVAEAL VDKNADVNAK DNEGQTSLHY AVVCEREALA
301: EFLVKQKADT TIKDEDGNSP LDLCESEWSW MREKKDSN

Arabidopsis Description

ACBP1Acyl-CoA-binding domain-containing protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SM23]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.