Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU0Hr1G005790.3 | |
| HORVU2Hr1G077940.1 | |
| HORVU6Hr1G050140.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G38580.1 | HORVU0Hr1G005790.3 | AT4G27780.1 | 18823312 |
| AT5G66110.1 | HORVU2Hr1G077940.1 | AT1G54060.1 | 21798944 |
| AT5G66110.1 | HORVU6Hr1G050140.1 | AT1G54060.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G206100.1 | Wheat | cytosol | 98.68 | 98.68 |
| TraesCS3D01G209500.1 | Wheat | cytosol | 98.01 | 98.01 |
| Zm00001d052760_P001 | Maize | cytosol | 85.43 | 85.43 |
| EES14354 | Sorghum | cytosol | 85.43 | 85.43 |
| Zm00001d034978_P001 | Maize | cytosol | 83.44 | 83.44 |
| Os01t0507700-01 | Rice | plasma membrane | 81.46 | 81.46 |
| HORVU5Hr1G069380.2 | Barley | cytosol | 77.48 | 76.97 |
| TraesCS3B01G238100.1 | Wheat | cytosol | 47.68 | 72.0 |
| Bra009662.1-P | Field mustard | cytosol | 42.38 | 52.89 |
| KRH24318 | Soybean | cytosol, nucleus, plastid | 29.14 | 51.16 |
| CDX88005 | Canola | cytosol | 48.34 | 50.34 |
| CDY07874 | Canola | cytosol | 48.34 | 50.34 |
| AT5G66110.1 | Thale cress | cytosol | 49.01 | 50.34 |
| PGSC0003DMT400009390 | Potato | cytosol | 52.98 | 50.31 |
| Solyc02g083550.1.1 | Tomato | cytosol | 51.66 | 49.06 |
| VIT_03s0038g02440.t01 | Wine grape | cytosol | 50.33 | 49.03 |
| Bra010738.1-P | Field mustard | cytosol | 49.67 | 49.02 |
| CDX90282 | Canola | cytosol | 49.67 | 49.02 |
| CDY12089 | Canola | cytosol | 49.67 | 49.02 |
| Solyc01g111600.2.1 | Tomato | nucleus | 49.67 | 49.02 |
| PGSC0003DMT400015784 | Potato | cytosol | 49.67 | 49.02 |
| VIT_04s0023g03910.t01 | Wine grape | cytosol | 39.07 | 48.76 |
| KRH60697 | Soybean | cytosol | 49.67 | 48.7 |
| KRH29001 | Soybean | cytosol | 49.67 | 48.08 |
| AT4G38580.1 | Thale cress | cytosol | 48.34 | 47.71 |
| Bra033570.1-P | Field mustard | cytosol | 48.34 | 47.71 |
| CDY65011 | Canola | cytosol | 48.34 | 47.71 |
| VIT_04s0023g03890.t01 | Wine grape | cytosol | 50.33 | 47.5 |
| CDX72748 | Canola | cytosol | 47.02 | 46.41 |
| HORVU5Hr1G057730.1 | Barley | cytosol | 48.34 | 45.34 |
| CDX69108 | Canola | cytosol | 43.05 | 42.48 |
| HORVU7Hr1G090970.1 | Barley | mitochondrion | 44.37 | 42.14 |
| Bra011581.1-P | Field mustard | cytosol | 42.38 | 41.83 |
| CDY52653 | Canola | cytosol | 42.38 | 41.83 |
| AT4G35060.1 | Thale cress | cytosol | 41.72 | 41.18 |
| HORVU4Hr1G017070.3 | Barley | cytosol | 44.37 | 39.41 |
| CDX76309 | Canola | cytosol | 39.74 | 38.96 |
| Bra034669.1-P | Field mustard | cytosol | 39.74 | 38.96 |
| CDY17504 | Canola | cytosol | 39.07 | 38.31 |
| KRH28829 | Soybean | cytosol | 30.46 | 38.02 |
| HORVU6Hr1G009000.1 | Barley | cytosol, plastid, vacuole | 46.36 | 31.11 |
| HORVU3Hr1G072940.2 | Barley | cytosol | 26.49 | 25.48 |
| HORVU6Hr1G066220.1 | Barley | cytosol | 29.14 | 23.78 |
| HORVU7Hr1G080490.1 | Barley | cytosol | 26.49 | 23.12 |
| HORVU2Hr1G011060.1 | Barley | nucleus, plastid | 21.19 | 20.65 |
| HORVU4Hr1G085090.2 | Barley | plastid | 37.09 | 19.58 |
Protein Annotations
| EMBL:AJ549119 | EnsemblPlants:HORVU3Hr1G049780.1 | EnsemblPlantsGene:HORVU3Hr1G049780 | Gene3D:3.30.70.100 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0006810 | GO:GO:0008150 | GO:GO:0030001 | GO:GO:0046872 | InterPro:HMA_dom | InterPro:HMA_dom_sf |
| InterPro:IPR006121 | PANTHER:PTHR22814 | PANTHER:PTHR22814:SF176 | PFAM:PF00403 | PFscan:PS50846 | SUPFAM:SSF55008 |
| UniParc:UPI000000CFF0 | UniProt:Q84L61 | MapMan:35.1 | : | : | : |
Description
Farnesylated protein 3 [Source:UniProtKB/TrEMBL;Acc:Q84L61]
Coordinates
chrchr3H:+:351936508..351937476
Molecular Weight (calculated)
16710.4 Da
IEP (calculated)
9.609
GRAVY (calculated)
-0.409
Length
151 amino acids
Sequence
(BLAST)
(BLAST)
001: MGALDHLSDL CSMTETKESL KLRKKRPQQT VNIKVKMDCE GCERRVKNAV KSIRGVTSVA VNPKMSKVTV TGHVEPRKVL ERVKSTGKAA EMWPYVPYTL
101: ATYPYVGGAY DKKAPAGFVR SAPQAMADPA APEIHYMNMF NDEDVNACTV M
101: ATYPYVGGAY DKKAPAGFVR SAPQAMADPA APEIHYMNMF NDEDVNACTV M
001: MGALDSLSEY ISDYFRVTRK RRKRKVMQTV NIKVKMDCDG CERRVKNAVS SMKGVKSVEV NRKIHKVTVS GYVEPKKVLK RIERTGKKAE IWPYVPYNMV
101: AYPYAVGTYD KKAPAGYVRK SEQSQLQLLP GAPENHYISL FSDENPNACT VM
101: AYPYAVGTYD KKAPAGYVRK SEQSQLQLLP GAPENHYISL FSDENPNACT VM
Arabidopsis Description
HIPP20HIPP20 [Source:UniProtKB/TrEMBL;Acc:A0A178W5Y0]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.