Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- plasma membrane 1
- plastid 2
- mitochondrion 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT4G38580.1 | EES13117 | AT4G27780.1 | 18823312 |
AT4G38580.1 | KXG37573 | AT4G27780.1 | 18823312 |
AT5G66110.1 | EES12241 | AT1G54060.1 | 21798944 |
AT5G66110.1 | KXG30464 | AT1G54060.1 | 21798944 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Zm00001d052760_P001 | Maize | cytosol | 94.04 | 94.04 |
Zm00001d034978_P001 | Maize | cytosol | 92.72 | 92.72 |
TraesCS3D01G209500.1 | Wheat | cytosol | 86.75 | 86.75 |
TraesCS3A01G206100.1 | Wheat | cytosol | 86.75 | 86.75 |
HORVU3Hr1G049780.1 | Barley | cytosol | 85.43 | 85.43 |
Os01t0507700-01 | Rice | plasma membrane | 84.11 | 84.11 |
TraesCS2D01G285700.1 | Wheat | cytosol | 80.79 | 80.79 |
TraesCS2B01G304100.1 | Wheat | cytosol | 80.79 | 80.79 |
TraesCS2A01G287200.1 | Wheat | cytosol | 80.79 | 80.79 |
TraesCS5A01G244000.1 | Wheat | cytosol | 76.82 | 76.32 |
TraesCS5D01G250700.1 | Wheat | cytosol | 76.16 | 75.66 |
HORVU5Hr1G069380.2 | Barley | cytosol | 74.17 | 73.68 |
TraesCS5B01G242000.1 | Wheat | cytosol | 74.17 | 73.68 |
TraesCS3B01G238100.1 | Wheat | cytosol | 41.06 | 62.0 |
Bra009662.1-P | Field mustard | cytosol | 45.7 | 57.02 |
CDY07874 | Canola | cytosol | 51.66 | 53.79 |
CDX88005 | Canola | cytosol | 51.66 | 53.79 |
AT5G66110.1 | Thale cress | cytosol | 52.32 | 53.74 |
PGSC0003DMT400009390 | Potato | cytosol | 56.29 | 53.46 |
VIT_03s0038g02440.t01 | Wine grape | cytosol | 54.3 | 52.9 |
VIT_04s0023g03910.t01 | Wine grape | cytosol | 42.38 | 52.89 |
Solyc01g111600.2.1 | Tomato | nucleus | 52.98 | 52.29 |
PGSC0003DMT400015784 | Potato | cytosol | 52.98 | 52.29 |
Solyc02g083550.1.1 | Tomato | cytosol | 54.97 | 52.2 |
CDY12089 | Canola | cytosol | 52.32 | 51.63 |
Bra010738.1-P | Field mustard | cytosol | 52.32 | 51.63 |
CDX90282 | Canola | cytosol | 52.32 | 51.63 |
EES11880 | Sorghum | cytosol | 52.32 | 50.97 |
KRH60697 | Soybean | cytosol | 51.66 | 50.65 |
VIT_04s0023g03890.t01 | Wine grape | cytosol | 53.64 | 50.62 |
Bra033570.1-P | Field mustard | cytosol | 50.99 | 50.33 |
AT4G38580.1 | Thale cress | cytosol | 50.99 | 50.33 |
CDY65011 | Canola | cytosol | 50.99 | 50.33 |
KRH29001 | Soybean | cytosol | 51.66 | 50.0 |
KRH24318 | Soybean | cytosol, nucleus, plastid | 28.48 | 50.0 |
CDX72748 | Canola | cytosol | 49.67 | 49.02 |
EER96651 | Sorghum | cytosol | 51.66 | 48.45 |
EER92834 | Sorghum | cytosol | 47.02 | 45.51 |
CDX69108 | Canola | cytosol | 45.7 | 45.1 |
EER99736 | Sorghum | cytosol | 49.67 | 44.64 |
CDY52653 | Canola | cytosol | 45.03 | 44.44 |
Bra011581.1-P | Field mustard | cytosol | 45.03 | 44.44 |
AT4G35060.1 | Thale cress | cytosol | 44.37 | 43.79 |
EES13808 | Sorghum | cytosol | 41.72 | 43.45 |
CDX76309 | Canola | cytosol | 42.38 | 41.56 |
Bra034669.1-P | Field mustard | cytosol | 42.38 | 41.56 |
CDY17504 | Canola | cytosol | 41.72 | 40.91 |
KRH28829 | Soybean | cytosol | 32.45 | 40.5 |
KXG30743 | Sorghum | plastid | 40.4 | 34.46 |
EER92967 | Sorghum | plastid | 38.41 | 29.9 |
EES03638 | Sorghum | cytosol | 29.14 | 27.33 |
OQU85626 | Sorghum | mitochondrion | 29.14 | 26.67 |
KXG39011 | Sorghum | cytosol | 33.77 | 24.52 |
EER89887 | Sorghum | cytosol | 27.15 | 20.3 |
Protein Annotations
Gene3D:3.30.70.100 | MapMan:35.1 | EntrezGene:8067059 | UniProt:C5YLD8 | EnsemblPlants:EES14354 | ProteinID:EES14354 |
ProteinID:EES14354.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
GO:GO:0005737 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0019725 | GO:GO:0030001 |
GO:GO:0046872 | GO:GO:0046914 | GO:GO:0046916 | InterPro:HMA_dom | InterPro:HMA_dom_sf | InterPro:IPR006121 |
PFAM:PF00403 | PFscan:PS50846 | PANTHER:PTHR22814 | PANTHER:PTHR22814:SF176 | EnsemblPlantsGene:SORBI_3007G002000 | SUPFAM:SSF55008 |
unigene:Sbi.609 | UniParc:UPI0001A87883 | RefSeq:XP_002444859.1 | : | : | : |
Description
hypothetical protein
Coordinates
chr7:-:164058..165279
Molecular Weight (calculated)
16677.4 Da
IEP (calculated)
9.865
GRAVY (calculated)
-0.329
Length
151 amino acids
Sequence
(BLAST)
(BLAST)
001: MGILDHLSHL CSLTETKEAL KLRKKRPLQT VNIKVKMDCE GCERRVKSAV KSMRGVTSVA VNPKQSKCTV TGYVEPAKVL QRVKATGKNA EMWPYVPYAL
101: TTYPYVGGAY DKKAPAGFVR SAPQAMAEPS APELKYMNMF SDENVNACTV M
101: TTYPYVGGAY DKKAPAGFVR SAPQAMAEPS APELKYMNMF SDENVNACTV M
001: MGALDSLSEY ISDYFRVTRK RRKRKVMQTV NIKVKMDCDG CERRVKNAVS SMKGVKSVEV NRKIHKVTVS GYVEPKKVLK RIERTGKKAE IWPYVPYNMV
101: AYPYAVGTYD KKAPAGYVRK SEQSQLQLLP GAPENHYISL FSDENPNACT VM
101: AYPYAVGTYD KKAPAGYVRK SEQSQLQLLP GAPENHYISL FSDENPNACT VM
Arabidopsis Description
HIPP20HIPP20 [Source:UniProtKB/TrEMBL;Acc:A0A178W5Y0]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.