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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 3
  • cytosol 3
  • plasma membrane 1
  • plastid 2
  • mitochondrion 1
PPI

Inferred distinct locusB in Crop

Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d052760_P001 Maize cytosol 94.04 94.04
Zm00001d034978_P001 Maize cytosol 92.72 92.72
TraesCS3D01G209500.1 Wheat cytosol 86.75 86.75
TraesCS3A01G206100.1 Wheat cytosol 86.75 86.75
HORVU3Hr1G049780.1 Barley cytosol 85.43 85.43
Os01t0507700-01 Rice plasma membrane 84.11 84.11
TraesCS2D01G285700.1 Wheat cytosol 80.79 80.79
TraesCS2B01G304100.1 Wheat cytosol 80.79 80.79
TraesCS2A01G287200.1 Wheat cytosol 80.79 80.79
TraesCS5A01G244000.1 Wheat cytosol 76.82 76.32
TraesCS5D01G250700.1 Wheat cytosol 76.16 75.66
HORVU5Hr1G069380.2 Barley cytosol 74.17 73.68
TraesCS5B01G242000.1 Wheat cytosol 74.17 73.68
TraesCS3B01G238100.1 Wheat cytosol 41.06 62.0
Bra009662.1-P Field mustard cytosol 45.7 57.02
CDY07874 Canola cytosol 51.66 53.79
CDX88005 Canola cytosol 51.66 53.79
AT5G66110.1 Thale cress cytosol 52.32 53.74
PGSC0003DMT400009390 Potato cytosol 56.29 53.46
VIT_03s0038g02440.t01 Wine grape cytosol 54.3 52.9
VIT_04s0023g03910.t01 Wine grape cytosol 42.38 52.89
Solyc01g111600.2.1 Tomato nucleus 52.98 52.29
PGSC0003DMT400015784 Potato cytosol 52.98 52.29
Solyc02g083550.1.1 Tomato cytosol 54.97 52.2
CDY12089 Canola cytosol 52.32 51.63
Bra010738.1-P Field mustard cytosol 52.32 51.63
CDX90282 Canola cytosol 52.32 51.63
EES11880 Sorghum cytosol 52.32 50.97
KRH60697 Soybean cytosol 51.66 50.65
VIT_04s0023g03890.t01 Wine grape cytosol 53.64 50.62
Bra033570.1-P Field mustard cytosol 50.99 50.33
AT4G38580.1 Thale cress cytosol 50.99 50.33
CDY65011 Canola cytosol 50.99 50.33
KRH29001 Soybean cytosol 51.66 50.0
KRH24318 Soybean cytosol, nucleus, plastid 28.48 50.0
CDX72748 Canola cytosol 49.67 49.02
EER96651 Sorghum cytosol 51.66 48.45
EER92834 Sorghum cytosol 47.02 45.51
CDX69108 Canola cytosol 45.7 45.1
EER99736 Sorghum cytosol 49.67 44.64
CDY52653 Canola cytosol 45.03 44.44
Bra011581.1-P Field mustard cytosol 45.03 44.44
AT4G35060.1 Thale cress cytosol 44.37 43.79
EES13808 Sorghum cytosol 41.72 43.45
CDX76309 Canola cytosol 42.38 41.56
Bra034669.1-P Field mustard cytosol 42.38 41.56
CDY17504 Canola cytosol 41.72 40.91
KRH28829 Soybean cytosol 32.45 40.5
KXG30743 Sorghum plastid 40.4 34.46
EER92967 Sorghum plastid 38.41 29.9
EES03638 Sorghum cytosol 29.14 27.33
OQU85626 Sorghum mitochondrion 29.14 26.67
KXG39011 Sorghum cytosol 33.77 24.52
EER89887 Sorghum cytosol 27.15 20.3
Protein Annotations
Gene3D:3.30.70.100MapMan:35.1EntrezGene:8067059UniProt:C5YLD8EnsemblPlants:EES14354ProteinID:EES14354
ProteinID:EES14354.1GO:GO:0003674GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0006810GO:GO:0008150GO:GO:0009987GO:GO:0019725GO:GO:0030001
GO:GO:0046872GO:GO:0046914GO:GO:0046916InterPro:HMA_domInterPro:HMA_dom_sfInterPro:IPR006121
PFAM:PF00403PFscan:PS50846PANTHER:PTHR22814PANTHER:PTHR22814:SF176EnsemblPlantsGene:SORBI_3007G002000SUPFAM:SSF55008
unigene:Sbi.609UniParc:UPI0001A87883RefSeq:XP_002444859.1:::
Description
hypothetical protein
Coordinates
chr7:-:164058..165279
Molecular Weight (calculated)
16677.4 Da
IEP (calculated)
9.865
GRAVY (calculated)
-0.329
Length
151 amino acids
Sequence
(BLAST)
001: MGILDHLSHL CSLTETKEAL KLRKKRPLQT VNIKVKMDCE GCERRVKSAV KSMRGVTSVA VNPKQSKCTV TGYVEPAKVL QRVKATGKNA EMWPYVPYAL
101: TTYPYVGGAY DKKAPAGFVR SAPQAMAEPS APELKYMNMF SDENVNACTV M
Best Arabidopsis Sequence Match ( AT1G71050.1 )
(BLAST)
001: MGALDSLSEY ISDYFRVTRK RRKRKVMQTV NIKVKMDCDG CERRVKNAVS SMKGVKSVEV NRKIHKVTVS GYVEPKKVLK RIERTGKKAE IWPYVPYNMV
101: AYPYAVGTYD KKAPAGYVRK SEQSQLQLLP GAPENHYISL FSDENPNACT VM
Arabidopsis Description
HIPP20HIPP20 [Source:UniProtKB/TrEMBL;Acc:A0A178W5Y0]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.