CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d020257_P001	Maize	cytosol	95.03	94.44
Zm00001d005656_P001	Maize	mitochondrion	91.93	91.93
HORVU5Hr1G057730.1	Barley	cytosol	86.34	86.34
TraesCS5B01G191700.1	Wheat	cytosol	85.71	85.71
TraesCS5D01G199500.1	Wheat	cytosol	85.09	85.62
TraesCS5A01G191400.1	Wheat	cytosol	85.09	85.62
GSMUA_Achr4P01830_001	Banana	cytosol	73.29	79.19
Os09t0364800-01	Rice	cytosol, nucleus	54.66	78.57
GSMUA_Achr3P04460_001	Banana	cytosol	71.43	77.18
GSMUA_Achr3P07890_001	Banana	cytosol, mitochondrion, plastid	70.19	75.84
KRH59402	Soybean	cytosol	69.57	73.2
KRH43240	Soybean	cytosol	69.57	73.2
Solyc04g054500.2.1	Tomato	cytosol	65.22	69.08
VIT_07s0031g01160.t01	Wine grape	cytosol	63.98	68.21
PGSC0003DMT400056666	Potato	cytosol	63.35	67.11
Bra011840.1-P	Field mustard	cytosol	65.22	66.46
CDX86196	Canola	cytosol	65.22	66.46
CDY41999	Canola	cytosol	65.22	66.46
CDY42647	Canola	cytosol	65.22	66.46
AT4G39700.1	Thale cress	cytosol	63.98	65.19
KRH31264	Soybean	cytosol	62.11	64.52
Solyc05g051820.2.1	Tomato	cytosol	61.49	64.29
EES13808	Sorghum	cytosol	57.76	64.14
EER99736	Sorghum	cytosol	66.46	63.69
PGSC0003DMT400056199	Potato	cytosol	60.87	63.64
KRG97609	Soybean	cytosol	60.87	62.42
EES11880	Sorghum	cytosol	54.04	56.13
EER92834	Sorghum	cytosol	50.93	52.56
EES14354	Sorghum	cytosol	48.45	51.66
KXG30743	Sorghum	plastid	41.61	37.85
EES03638	Sorghum	cytosol	32.3	32.3
EER92967	Sorghum	plastid	36.02	29.9
OQU85626	Sorghum	mitochondrion	29.19	28.48
KXG39011	Sorghum	cytosol	32.92	25.48
EER89887	Sorghum	cytosol	29.19	23.27

Protein Annotations

Gene3D:3.30.70.100	MapMan:35.1	EntrezGene:8055592	UniProt:C5XB98	EnsemblPlants:EER96651	ProteinID:EER96651
ProteinID:EER96651.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006810	GO:GO:0008150	GO:GO:0009987	GO:GO:0019725	GO:GO:0030001
GO:GO:0046872	GO:GO:0046914	GO:GO:0046916	InterPro:HMA_dom	InterPro:HMA_dom_sf	InterPro:IPR006121
PFAM:PF00403	PFscan:PS50846	PANTHER:PTHR22814	PANTHER:PTHR22814:SF165	EnsemblPlantsGene:SORBI_3002G183400	SUPFAM:SSF55008
unigene:Sbi.11074	UniParc:UPI0001A83A5A	RefSeq:XP_002460130.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr2:+:56582964..56587124

Molecular Weight (calculated)

17774.5 Da

IEP (calculated)

9.975

GRAVY (calculated)

-0.525

Length

161 amino acids

Sequence
(BLAST)

001: MGGTLEYLSD LLGGGGGGSS RRRYKKRKQF QTVELKVRMD CDGCEMKVRN ALSSMKGVHS VEINRKQYKV TVQGYVEPHK VVKRVQATGK KAEIWPYVPY
101: SLVAHPYAAP AYDKKAPPGY VRRVDAVMPV SSYGGPTAAG PQEERLVTMF SDDNPNACSI M

Best Arabidopsis Sequence Match ( AT4G39700.1 )
(BLAST)

001: MGVGGTLEYI SELIGNGGSH SYGKRKKKKQ FQTVELKVRM DCDGCVLKIK NSLSSLKGVK TVEINKKQQK VTVSGYADAS KVLKKAKATG KKAEIWPYVP
101: YNLVAQPYIA QAYDKKAPPG YVRKVDPNVT TGTMAVYYDD PSYTSLFSDD NPNACSIM

Arabidopsis Description

HIPP23Heavy metal-associated isoprenylated plant protein 23 [Source:UniProtKB/Swiss-Prot;Acc:O65657]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.