CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX95914
CDY01760
CDY28566
CDY44079

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G39700.1	CDX95914	AT1G69600.1	18974936
AT4G39700.1	CDY01760	AT1G69600.1	18974936
AT4G39700.1	CDY28566	AT1G69600.1	18974936
AT4G39700.1	CDY44079	AT1G69600.1	18974936

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX86196	Canola	cytosol	100.0	100.0
Bra011840.1-P	Field mustard	cytosol	99.37	99.37
CDY41999	Canola	cytosol	99.37	99.37
AT4G39700.1	Thale cress	cytosol	93.67	93.67
PGSC0003DMT400056666	Potato	cytosol	75.32	78.29
Solyc04g054500.2.1	Tomato	cytosol	75.32	78.29
KRH43240	Soybean	cytosol	74.68	77.12
KRH59402	Soybean	cytosol	74.68	77.12
KRH31264	Soybean	cytosol	73.42	74.84
VIT_07s0031g01160.t01	Wine grape	cytosol	70.25	73.51
PGSC0003DMT400056199	Potato	cytosol	71.52	73.38
KRG97609	Soybean	cytosol	70.89	71.34
Solyc05g051820.2.1	Tomato	cytosol	68.99	70.78
GSMUA_Achr4P01830_001	Banana	cytosol	66.46	70.47
HORVU5Hr1G057730.1	Barley	cytosol	69.62	68.32
TraesCS5D01G199500.1	Wheat	cytosol	68.99	68.12
TraesCS5B01G191700.1	Wheat	cytosol	68.99	67.7
TraesCS5A01G191400.1	Wheat	cytosol	68.35	67.5
GSMUA_Achr3P04460_001	Banana	cytosol	62.66	66.44
EER96651	Sorghum	cytosol	66.46	65.22
GSMUA_Achr3P07890_001	Banana	cytosol, mitochondrion, plastid	60.76	64.43
EER99736	Sorghum	cytosol	67.72	63.69
Zm00001d020257_P001	Maize	cytosol	65.19	63.58
TraesCS2D01G168000.1	Wheat	cytosol	64.56	62.96
TraesCS2B01G186900.1	Wheat	cytosol	64.56	62.96
TraesCS2A01G160700.1	Wheat	cytosol	64.56	62.96
GSMUA_Achr10P...	Banana	cytosol	57.59	62.33
CDY36193	Canola	cytosol	58.23	61.33
Os03t0383900-01	Rice	cytosol	60.13	60.51
CDX75144	Canola	cytosol	48.1	60.32
Zm00001d005656_P001	Maize	mitochondrion	60.76	59.63
GSMUA_Achr7P11680_001	Banana	cytosol	55.7	59.06
Os08t0403300-00	Rice	cytosol	55.06	58.0
CDY21408	Canola	cytosol	53.8	55.56
CDY04750	Canola	cytosol	53.8	55.56
CDX96299	Canola	cytosol	52.53	55.33
CDX72773	Canola	cytosol	52.53	55.33
CDY25762	Canola	cytosol	51.9	53.59
CDY12499	Canola	cytosol	51.9	53.59
Zm00001d032291_P001	Maize	cytosol	48.73	53.47
EES13808	Sorghum	cytosol	48.73	53.1
TraesCS4B01G105100.1	Wheat	mitochondrion, plastid	49.37	52.7
TraesCS4A01G211400.1	Wheat	mitochondrion, plastid	48.73	52.03
TraesCS4D01G102000.1	Wheat	mitochondrion, plastid	48.73	52.03
Os09t0364800-01	Rice	cytosol, nucleus	35.44	50.0
CDY65011	Canola	cytosol	46.84	48.37
CDX90282	Canola	cytosol	46.84	48.37
CDX72748	Canola	cytosol	46.84	48.37
CDY12089	Canola	cytosol	46.2	47.71
CDY55938	Canola	cytosol	43.67	46.31
CDX85452	Canola	cytosol	43.67	46.31
CDX88005	Canola	cytosol	42.41	46.21
CDY07874	Canola	cytosol	42.41	46.21
CDY38431	Canola	cytosol	43.04	45.64
HORVU4Hr1G017070.3	Barley	cytosol	48.73	45.29
CDY16919	Canola	cytosol	42.41	44.97
CDY52653	Canola	cytosol	40.51	41.83
CDX76309	Canola	cytosol	40.51	41.56
CDY17504	Canola	cytosol	40.51	41.56
CDX69108	Canola	cytosol	39.87	41.18
CDY08096	Canola	cytosol	34.18	39.13
CDY05886	Canola	cytosol	34.18	39.13
CDY57455	Canola	cytosol	30.38	34.04
CDX94648	Canola	cytosol	30.38	34.04
CDY06206	Canola	cytosol	32.28	33.77
CDY27183	Canola	cytosol	33.54	33.54
CDX76017	Canola	cytosol	32.91	32.91
CDX72102	Canola	cytosol	32.91	32.91
CDY47384	Canola	cytosol, extracellular	32.91	32.7
CDY13354	Canola	cytosol	33.54	29.78
CDX67533	Canola	cytosol	33.54	29.78
CDX86861	Canola	plastid	34.18	29.67
CDX99542	Canola	plastid	34.18	29.67
CDX85985	Canola	mitochondrion	20.89	27.5
CDY09978	Canola	cytosol	34.81	18.84

Protein Annotations

EnsemblPlants:CDY42647	EnsemblPlantsGene:GSBRNA2T00075156001	Gene3D:3.30.70.100	GO:A0A078HXR2	GO:GO:0003674	GO:GO:0005488
GO:GO:0006810	GO:GO:0008150	GO:GO:0030001	GO:GO:0046872	InterPro:HMA_dom	InterPro:HMA_dom_sf
InterPro:IPR006121	PANTHER:PTHR22814	PANTHER:PTHR22814:SF171	PFAM:PF00403	PFscan:PS50846	ProteinID:CDY42647
ProteinID:CDY42647.1	SUPFAM:SSF55008	UniParc:UPI0004EC2DDA	UniProt:A0A078HXR2	MapMan:35.1	:

Description

BnaC01g00590DBnaA06g29130D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HXR2]

Coordinates

chrLK032530:+:215644..217435

Molecular Weight (calculated)

17332.9 Da

IEP (calculated)

9.884

GRAVY (calculated)

-0.529

Length

158 amino acids

Sequence
(BLAST)

001: MGVGGTLEYI SELIGSGGSH SYGKRKKKKQ FQTVELKVRM DCDGCVLKVK NSLSSLKGVK SVEINKKQQK VTVSGYAEAS KVLKKAKSTG KKAEIWPYVP
101: YNLVAQPYIA QAYDKKAPPG YVRKMDPYVT TGTMAVDNDD PSYTSMFSDD NPNACSIM

Best Arabidopsis Sequence Match ( AT4G39700.1 )
(BLAST)

001: MGVGGTLEYI SELIGNGGSH SYGKRKKKKQ FQTVELKVRM DCDGCVLKIK NSLSSLKGVK TVEINKKQQK VTVSGYADAS KVLKKAKATG KKAEIWPYVP
101: YNLVAQPYIA QAYDKKAPPG YVRKVDPNVT TGTMAVYYDD PSYTSLFSDD NPNACSIM

Arabidopsis Description

HIPP23Heavy metal-associated isoprenylated plant protein 23 [Source:UniProtKB/Swiss-Prot;Acc:O65657]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.