Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra010738.1-P | Field mustard | cytosol | 98.69 | 98.69 |
| CDX90282 | Canola | cytosol | 98.69 | 98.69 |
| CDY65011 | Canola | cytosol | 96.73 | 96.73 |
| AT4G38580.1 | Thale cress | cytosol | 94.12 | 94.12 |
| CDX72748 | Canola | cytosol | 93.46 | 93.46 |
| Solyc01g111600.2.1 | Tomato | nucleus | 83.66 | 83.66 |
| PGSC0003DMT400015784 | Potato | cytosol | 83.01 | 83.01 |
| VIT_03s0038g02440.t01 | Wine grape | cytosol | 80.39 | 79.35 |
| CDY52653 | Canola | cytosol | 74.51 | 74.51 |
| CDX69108 | Canola | cytosol | 74.51 | 74.51 |
| GSMUA_Achr4P25770_001 | Banana | cytosol, plastid | 72.55 | 71.61 |
| CDX76309 | Canola | cytosol | 71.9 | 71.43 |
| CDY17504 | Canola | cytosol | 71.24 | 70.78 |
| GSMUA_Achr1P02370_001 | Banana | cytosol, plastid | 67.97 | 67.1 |
| CDX88005 | Canola | cytosol | 63.4 | 66.9 |
| CDY07874 | Canola | cytosol | 63.4 | 66.9 |
| TraesCS2B01G077100.1 | Wheat | cytosol, plastid | 64.71 | 63.87 |
| TraesCS2A01G064900.1 | Wheat | nucleus | 64.71 | 63.87 |
| EES11880 | Sorghum | cytosol | 64.71 | 63.87 |
| TraesCS2D01G063000.1 | Wheat | cytosol, plastid | 64.71 | 63.87 |
| Zm00001d004138_P001 | Maize | cytosol | 64.71 | 63.87 |
| Os04t0244800-01 | Rice | plasma membrane | 64.05 | 63.23 |
| TraesCS6B01G059000.1 | Wheat | cytosol | 63.4 | 61.01 |
| TraesCS6A01G043000.1 | Wheat | cytosol | 63.4 | 61.01 |
| TraesCS6D01G049600.1 | Wheat | cytosol | 62.75 | 60.38 |
| Os03t0156600-01 | Rice | cytosol | 59.48 | 58.71 |
| EER92834 | Sorghum | cytosol | 58.82 | 57.69 |
| CDX96299 | Canola | cytosol | 54.9 | 56.0 |
| CDX72773 | Canola | cytosol | 54.9 | 56.0 |
| TraesCS7A01G382700.1 | Wheat | mitochondrion, plastid | 57.52 | 54.66 |
| TraesCS7B01G285400.1 | Wheat | mitochondrion, plastid | 57.52 | 54.66 |
| Zm00001d027720_P001 | Maize | cytosol | 55.56 | 54.49 |
| HORVU7Hr1G090970.1 | Barley | mitochondrion | 56.21 | 54.09 |
| TraesCS7D01G379100.1 | Wheat | mitochondrion, plastid | 56.21 | 53.42 |
| EES14354 | Sorghum | cytosol | 51.63 | 52.32 |
| Os01t0507700-01 | Rice | plasma membrane | 51.63 | 52.32 |
| Zm00001d034978_P001 | Maize | cytosol | 50.98 | 51.66 |
| CDY12499 | Canola | cytosol | 51.63 | 51.63 |
| TraesCS5A01G244000.1 | Wheat | cytosol | 50.98 | 51.32 |
| TraesCS5D01G250700.1 | Wheat | cytosol | 50.98 | 51.32 |
| TraesCS2A01G287200.1 | Wheat | cytosol | 50.33 | 50.99 |
| TraesCS2B01G304100.1 | Wheat | cytosol | 50.33 | 50.99 |
| TraesCS2D01G285700.1 | Wheat | cytosol | 50.33 | 50.99 |
| CDY25762 | Canola | cytosol | 50.98 | 50.98 |
| TraesCS5B01G242000.1 | Wheat | cytosol | 50.33 | 50.66 |
| TraesCS3A01G206100.1 | Wheat | cytosol | 49.67 | 50.33 |
| CDY21408 | Canola | cytosol | 50.33 | 50.33 |
| HORVU5Hr1G069380.2 | Barley | cytosol | 49.67 | 50.0 |
| CDX75144 | Canola | cytosol | 41.18 | 50.0 |
| CDY04750 | Canola | cytosol | 49.67 | 49.67 |
| TraesCS3D01G209500.1 | Wheat | cytosol | 49.02 | 49.67 |
| Zm00001d052760_P001 | Maize | cytosol | 49.02 | 49.67 |
| HORVU3Hr1G049780.1 | Barley | cytosol | 49.02 | 49.67 |
| CDX86196 | Canola | cytosol | 47.71 | 46.2 |
| CDY41999 | Canola | cytosol | 47.71 | 46.2 |
| CDY42647 | Canola | cytosol | 47.71 | 46.2 |
| CDX85452 | Canola | cytosol | 43.79 | 44.97 |
| CDY38431 | Canola | cytosol | 43.79 | 44.97 |
| CDY55938 | Canola | cytosol | 43.79 | 44.97 |
| CDY36193 | Canola | cytosol | 43.79 | 44.67 |
| CDY16919 | Canola | cytosol | 43.14 | 44.3 |
| TraesCS3B01G238100.1 | Wheat | cytosol | 28.1 | 43.0 |
| HORVU6Hr1G009000.1 | Barley | cytosol, plastid, vacuole | 61.44 | 41.78 |
| CDY08096 | Canola | cytosol | 30.07 | 33.33 |
| CDY05886 | Canola | cytosol | 30.07 | 33.33 |
| CDY57455 | Canola | cytosol | 28.76 | 31.21 |
| CDX94648 | Canola | cytosol | 28.76 | 31.21 |
| CDY27183 | Canola | cytosol | 32.03 | 31.01 |
| CDX72102 | Canola | cytosol | 31.37 | 30.38 |
| CDX76017 | Canola | cytosol | 31.37 | 30.38 |
| CDY47384 | Canola | cytosol, extracellular | 31.37 | 30.19 |
| HORVU2Hr1G011060.1 | Barley | nucleus, plastid | 28.76 | 28.39 |
| CDX99542 | Canola | plastid | 32.68 | 27.47 |
| CDX86861 | Canola | plastid | 32.68 | 27.47 |
| CDY06206 | Canola | cytosol | 26.8 | 27.15 |
| CDX67533 | Canola | cytosol | 30.07 | 25.84 |
| CDY13354 | Canola | cytosol | 30.07 | 25.84 |
| CDX85985 | Canola | mitochondrion | 16.99 | 21.67 |
| CDY09978 | Canola | cytosol | 28.76 | 15.07 |
Protein Annotations
| EnsemblPlants:CDY12089 | EnsemblPlantsGene:GSBRNA2T00061058001 | Gene3D:3.30.70.100 | GO:A0A078FGG1 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0006810 | GO:GO:0008150 | GO:GO:0030001 | GO:GO:0046872 | InterPro:HMA_dom | InterPro:HMA_dom_sf |
| InterPro:IPR006121 | PANTHER:PTHR22814 | PANTHER:PTHR22814:SF14 | PFAM:PF00403 | ProteinID:CDY12089 | ProteinID:CDY12089.1 |
| SEG:seg | SUPFAM:SSF55008 | UniParc:UPI0003E6ABAD | UniProt:A0A078FGG1 | MapMan:35.1 | : |
Description
BnaC03g60050DBnaC03g60050D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FGG1]
Coordinates
chrLK032017:+:409827..411388
Molecular Weight (calculated)
17071.5 Da
IEP (calculated)
9.142
GRAVY (calculated)
-0.469
Length
153 amino acids
Sequence
(BLAST)
(BLAST)
001: MGVLDHVSEM FDCSHGHKIK KRRQLQTVEI KVKMDCEGCE RKVRRSVEGM EGVSSVSLEP KAHKVTVVGY VEPNKVVSRM AHRTGKKVEL WPYVPYDVVA
101: HPYASGVYDK KAPSGYVRRA DDPGVSQLAR ASSTEVRYTT AFSDENPTAC VVM
101: HPYASGVYDK KAPSGYVRRA DDPGVSQLAR ASSTEVRYTT AFSDENPTAC VVM
001: MGVLDHVSEM FDCSHGHKIK KRKQLQTVEI KVKMDCEGCE RKVRRSVEGM KGVSSVTLEP KAHKVTVVGY VDPNKVVARM SHRTGKKVEL WPYVPYDVVA
101: HPYAAGVYDK KAPSGYVRRV DDPGVSQLAR ASSTEVRYTT AFSDENPAAC VVM
101: HPYAAGVYDK KAPSGYVRRV DDPGVSQLAR ASSTEVRYTT AFSDENPAAC VVM
Arabidopsis Description
HIPP26HIPP26 [Source:UniProtKB/TrEMBL;Acc:A0A178V1F5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.