Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G059000.1 | Wheat | cytosol | 100.0 | 100.0 |
| TraesCS6D01G049600.1 | Wheat | cytosol | 99.37 | 99.37 |
| Zm00001d004138_P001 | Maize | cytosol | 76.1 | 78.06 |
| TraesCS2A01G064900.1 | Wheat | nucleus | 74.84 | 76.77 |
| Os04t0244800-01 | Rice | plasma membrane | 74.84 | 76.77 |
| EES11880 | Sorghum | cytosol | 73.58 | 75.48 |
| Bra009662.1-P | Field mustard | cytosol | 55.35 | 72.73 |
| GSMUA_Achr1P02370_001 | Banana | cytosol, plastid | 69.81 | 71.61 |
| GSMUA_Achr4P25770_001 | Banana | cytosol, plastid | 69.18 | 70.97 |
| TraesCS7A01G382700.1 | Wheat | mitochondrion, plastid | 69.81 | 68.94 |
| CDX88005 | Canola | cytosol | 62.26 | 68.28 |
| CDY07874 | Canola | cytosol | 62.26 | 68.28 |
| HORVU6Hr1G009000.1 | Barley | cytosol, plastid, vacuole | 94.34 | 66.67 |
| VIT_03s0038g02440.t01 | Wine grape | cytosol | 63.52 | 65.16 |
| AT5G66110.1 | Thale cress | cytosol | 59.75 | 64.63 |
| AT4G38580.1 | Thale cress | cytosol | 61.64 | 64.05 |
| VIT_04s0023g03910.t01 | Wine grape | cytosol | 48.43 | 63.64 |
| CDY65011 | Canola | cytosol | 61.01 | 63.4 |
| Bra033570.1-P | Field mustard | cytosol | 61.01 | 63.4 |
| Bra010738.1-P | Field mustard | cytosol | 61.01 | 63.4 |
| CDX90282 | Canola | cytosol | 61.01 | 63.4 |
| CDY12089 | Canola | cytosol | 61.01 | 63.4 |
| KRH60697 | Soybean | cytosol | 61.01 | 62.99 |
| CDX72748 | Canola | cytosol | 59.75 | 62.09 |
| PGSC0003DMT400015784 | Potato | cytosol | 59.75 | 62.09 |
| Solyc01g111600.2.1 | Tomato | nucleus | 59.75 | 62.09 |
| PGSC0003DMT400009390 | Potato | cytosol | 61.64 | 61.64 |
| Solyc02g083550.1.1 | Tomato | cytosol | 61.01 | 61.01 |
| KRH29001 | Soybean | cytosol | 58.49 | 59.62 |
| VIT_04s0023g03890.t01 | Wine grape | cytosol | 58.49 | 58.12 |
| CDY52653 | Canola | cytosol | 52.2 | 54.25 |
| Bra011581.1-P | Field mustard | cytosol | 52.2 | 54.25 |
| AT4G35060.1 | Thale cress | cytosol | 52.2 | 54.25 |
| CDX69108 | Canola | cytosol | 52.2 | 54.25 |
| TraesCS5A01G244000.1 | Wheat | cytosol | 50.31 | 52.63 |
| Bra034669.1-P | Field mustard | cytosol | 49.69 | 51.3 |
| CDX76309 | Canola | cytosol | 49.69 | 51.3 |
| CDY17504 | Canola | cytosol | 49.06 | 50.65 |
| TraesCS2A01G287200.1 | Wheat | cytosol | 47.8 | 50.33 |
| TraesCS3A01G206100.1 | Wheat | cytosol | 47.8 | 50.33 |
| TraesCS5A01G191400.1 | Wheat | cytosol | 49.06 | 48.75 |
| KRH24318 | Soybean | cytosol, nucleus, plastid | 25.16 | 46.51 |
| TraesCS4A01G211400.1 | Wheat | mitochondrion, plastid | 42.14 | 45.27 |
| TraesCS2A01G160700.1 | Wheat | cytosol | 41.51 | 40.74 |
| KRH28829 | Soybean | cytosol | 30.19 | 39.67 |
| TraesCS6A01G259700.1 | Wheat | mitochondrion | 28.93 | 32.17 |
| TraesCS7A01G345500.1 | Wheat | cytosol | 28.3 | 27.44 |
| TraesCS5A01G516900.1 | Wheat | plastid | 28.3 | 23.08 |
| TraesCS1A01G200700.1 | Wheat | cytosol, plastid | 27.04 | 22.05 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G043000.1 | EnsemblPlantsGene:TraesCS6A01G043000 | Gene3D:3.30.70.100 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0006810 |
| GO:GO:0008150 | GO:GO:0030001 | GO:GO:0046872 | InterPro:HMA_dom | InterPro:HMA_dom_sf | InterPro:IPR006121 |
| PANTHER:PTHR22814 | PANTHER:PTHR22814:SF168 | PFAM:PF00403 | SEG:seg | SUPFAM:SSF55008 | TIGR:cd00371 |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr6A:+:22555335..22555814
Molecular Weight (calculated)
17526.3 Da
IEP (calculated)
9.598
GRAVY (calculated)
-0.425
Length
159 amino acids
Sequence
(BLAST)
(BLAST)
001: MGILDAVSDM CACPTVRTRR HIKKRPQLET VEMKVRIDCE GCERRIRKAV DGIRGVTGVE VLPKQNKVAV TGYIDDPAKL MRRVARKTGK KVEPWPYVPY
101: DVVPHPYAPG AYDKKAPPGY VRNVVADPDA APLARASSTE VKYTSAFSDE NPNAACAVM
101: DVVPHPYAPG AYDKKAPPGY VRNVVADPDA APLARASSTE VKYTSAFSDE NPNAACAVM
001: MGVLDHVSEM FDCSHGHKIK KRKQLQTVEI KVKMDCEGCE RKVRRSVEGM KGVSSVTLEP KAHKVTVVGY VDPNKVVARM SHRTGKKVEL WPYVPYDVVA
101: HPYAAGVYDK KAPSGYVRRV DDPGVSQLAR ASSTEVRYTT AFSDENPAAC VVM
101: HPYAAGVYDK KAPSGYVRRV DDPGVSQLAR ASSTEVRYTT AFSDENPAAC VVM
Arabidopsis Description
HIPP26HIPP26 [Source:UniProtKB/TrEMBL;Acc:A0A178V1F5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.