Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid
Predictor Summary:
Predictor Summary:
- mitochondrion 4
- plastid 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G285400.1 | Wheat | mitochondrion, plastid | 99.38 | 99.38 |
| TraesCS7D01G379100.1 | Wheat | mitochondrion, plastid | 98.76 | 98.76 |
| HORVU7Hr1G090970.1 | Barley | mitochondrion | 92.55 | 93.71 |
| EES11880 | Sorghum | cytosol | 67.7 | 70.32 |
| Os04t0244800-01 | Rice | plasma membrane | 67.7 | 70.32 |
| TraesCS2A01G064900.1 | Wheat | nucleus | 67.7 | 70.32 |
| TraesCS6A01G043000.1 | Wheat | cytosol | 68.94 | 69.81 |
| Zm00001d004138_P001 | Maize | cytosol | 67.08 | 69.68 |
| GSMUA_Achr4P25770_001 | Banana | cytosol, plastid | 60.25 | 62.58 |
| VIT_03s0038g02440.t01 | Wine grape | cytosol | 59.01 | 61.29 |
| GSMUA_Achr1P02370_001 | Banana | cytosol, plastid | 59.01 | 61.29 |
| Bra009662.1-P | Field mustard | cytosol | 45.34 | 60.33 |
| KRH60697 | Soybean | cytosol | 56.52 | 59.09 |
| Bra033570.1-P | Field mustard | cytosol | 55.28 | 58.17 |
| CDY65011 | Canola | cytosol | 55.28 | 58.17 |
| VIT_04s0023g03910.t01 | Wine grape | cytosol | 43.48 | 57.85 |
| AT4G38580.1 | Thale cress | cytosol | 54.66 | 57.52 |
| CDY12089 | Canola | cytosol | 54.66 | 57.52 |
| CDX90282 | Canola | cytosol | 54.66 | 57.52 |
| Bra010738.1-P | Field mustard | cytosol | 54.66 | 57.52 |
| CDX72748 | Canola | cytosol | 54.04 | 56.86 |
| PGSC0003DMT400009390 | Potato | cytosol | 55.9 | 56.6 |
| CDY07874 | Canola | cytosol | 50.93 | 56.55 |
| CDX88005 | Canola | cytosol | 50.93 | 56.55 |
| Solyc02g083550.1.1 | Tomato | cytosol | 55.28 | 55.97 |
| PGSC0003DMT400015784 | Potato | cytosol | 52.8 | 55.56 |
| Solyc01g111600.2.1 | Tomato | nucleus | 52.8 | 55.56 |
| AT5G66110.1 | Thale cress | cytosol | 50.31 | 55.1 |
| KRH29001 | Soybean | cytosol | 52.8 | 54.49 |
| VIT_04s0023g03890.t01 | Wine grape | cytosol | 53.42 | 53.75 |
| CDX69108 | Canola | cytosol | 50.31 | 52.94 |
| Bra011581.1-P | Field mustard | cytosol | 50.31 | 52.94 |
| CDY52653 | Canola | cytosol | 50.31 | 52.94 |
| AT4G35060.1 | Thale cress | cytosol | 49.07 | 51.63 |
| CDX76309 | Canola | cytosol | 48.45 | 50.65 |
| Bra034669.1-P | Field mustard | cytosol | 48.45 | 50.65 |
| CDY17504 | Canola | cytosol | 47.83 | 50.0 |
| TraesCS2A01G287200.1 | Wheat | cytosol | 44.1 | 47.02 |
| TraesCS3A01G206100.1 | Wheat | cytosol | 43.48 | 46.36 |
| TraesCS4A01G211400.1 | Wheat | mitochondrion, plastid | 42.24 | 45.95 |
| TraesCS5A01G191400.1 | Wheat | cytosol | 44.72 | 45.0 |
| TraesCS5A01G244000.1 | Wheat | cytosol | 42.24 | 44.74 |
| KRH24318 | Soybean | cytosol, nucleus, plastid | 22.98 | 43.02 |
| TraesCS2A01G160700.1 | Wheat | cytosol | 42.86 | 42.59 |
| KRH28829 | Soybean | cytosol | 28.57 | 38.02 |
| TraesCS6A01G259700.1 | Wheat | mitochondrion | 27.33 | 30.77 |
| TraesCS7A01G345500.1 | Wheat | cytosol | 27.33 | 26.83 |
| TraesCS5A01G516900.1 | Wheat | plastid | 26.09 | 21.54 |
| TraesCS1A01G200700.1 | Wheat | cytosol, plastid | 24.84 | 20.51 |
Protein Annotations
| EnsemblPlants:TraesCS7A01G382700.1 | EnsemblPlantsGene:TraesCS7A01G382700 | Gene3D:3.30.70.100 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0006810 |
| GO:GO:0008150 | GO:GO:0030001 | GO:GO:0046872 | InterPro:HMA_dom | InterPro:HMA_dom_sf | InterPro:IPR006121 |
| PANTHER:PTHR22814 | PANTHER:PTHR22814:SF168 | PFAM:PF00403 | PFscan:PS50846 | SUPFAM:SSF55008 | MapMan:35.1 |
Description
No Description!
Coordinates
chr7A:-:556920828..556921313
Molecular Weight (calculated)
17469.0 Da
IEP (calculated)
9.212
GRAVY (calculated)
-0.329
Length
161 amino acids
Sequence
(BLAST)
(BLAST)
001: MGFLEALSGL CRSCPAPLTR GHLQKGRQLE TVEMKVRIDC EGCVSKIRKT LEGMDGVTGV DVVPRENRVT VTGYVDAAKV MRRVARKTGK RVEPWPYVPY
101: DVVAHPYAPG AYDKRAPAGY VRDVMANPGG ANASFARATS TETRYTGAFS DENPNAACAI M
101: DVVAHPYAPG AYDKRAPAGY VRDVMANPGG ANASFARATS TETRYTGAFS DENPNAACAI M
001: MGVLDHVSEM FDCSHGHKIK KRKQLQTVEI KVKMDCEGCE RKVRRSVEGM KGVSSVTLEP KAHKVTVVGY VDPNKVVARM SHRTGKKVEL WPYVPYDVVA
101: HPYAAGVYDK KAPSGYVRRV DDPGVSQLAR ASSTEVRYTT AFSDENPAAC VVM
101: HPYAAGVYDK KAPSGYVRRV DDPGVSQLAR ASSTEVRYTT AFSDENPAAC VVM
Arabidopsis Description
HIPP26HIPP26 [Source:UniProtKB/TrEMBL;Acc:A0A178V1F5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.