Factsheet for GSMUA_Achr4P25770_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plastid

Predictor Summary:

nucleus 1
cytosol 2
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr3P05880_001
GSMUA_Achr4P04370_001
GSMUA_Achr4P05400_001
GSMUA_Achr8P23650_001
GSMUA_Achr9P14340_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G38580.1	GSMUA_Achr4P04370_001	AT4G27780.1	18823312
AT4G38580.1	GSMUA_Achr4P05400_001	AT4G27780.1	18823312
AT5G66110.1	GSMUA_Achr3P05880_001	AT1G54060.1	21798944
AT5G66110.1	GSMUA_Achr8P23650_001	AT1G54060.1	21798944
AT5G66110.1	GSMUA_Achr9P14340_001	AT1G54060.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P02370_001	Banana	cytosol, plastid	83.87	83.87
Zm00001d004138_P001	Maize	cytosol	74.84	74.84
Os04t0244800-01	Rice	plasma membrane	74.19	74.19
AT4G38580.1	Thale cress	cytosol	72.9	73.86
PGSC0003DMT400015784	Potato	cytosol	72.9	73.86
Solyc01g111600.2.1	Tomato	nucleus	72.9	73.86
Bra009662.1-P	Field mustard	cytosol	57.42	73.55
EES11880	Sorghum	cytosol	73.55	73.55
Bra033570.1-P	Field mustard	cytosol	72.26	73.2
CDX90282	Canola	cytosol	72.26	73.2
Bra010738.1-P	Field mustard	cytosol	72.26	73.2
CDY65011	Canola	cytosol	72.26	73.2
TraesCS2D01G063000.1	Wheat	cytosol, plastid	72.9	72.9
TraesCS2B01G077100.1	Wheat	cytosol, plastid	72.9	72.9
TraesCS2A01G064900.1	Wheat	nucleus	72.9	72.9
KRH60697	Soybean	cytosol	72.26	72.73
CDY12089	Canola	cytosol	71.61	72.55
CDX72748	Canola	cytosol	70.97	71.9
VIT_03s0038g02440.t01	Wine grape	cytosol	71.61	71.61
VIT_04s0023g03910.t01	Wine grape	cytosol	55.48	71.07
AT5G66110.1	Thale cress	cytosol	66.45	70.07
CDY07874	Canola	cytosol	65.16	69.66
CDX88005	Canola	cytosol	65.16	69.66
KRH29001	Soybean	cytosol	69.68	69.23
TraesCS6B01G059000.1	Wheat	cytosol	70.97	69.18
TraesCS6A01G043000.1	Wheat	cytosol	70.97	69.18
TraesCS6D01G049600.1	Wheat	cytosol	70.97	69.18
PGSC0003DMT400009390	Potato	cytosol	69.03	67.3
Os03t0156600-01	Rice	cytosol	67.1	67.1
Solyc02g083550.1.1	Tomato	cytosol	67.74	66.04
VIT_04s0023g03890.t01	Wine grape	cytosol	67.1	65.0
EER92834	Sorghum	cytosol	64.52	64.1
Bra011581.1-P	Field mustard	cytosol	61.94	62.75
CDY52653	Canola	cytosol	61.94	62.75
Bra034669.1-P	Field mustard	cytosol	61.94	62.34
CDX76309	Canola	cytosol	61.94	62.34
HORVU7Hr1G090970.1	Barley	mitochondrion	63.87	62.26
Zm00001d027720_P001	Maize	cytosol	62.58	62.18
CDX69108	Canola	cytosol	61.29	62.09
CDY17504	Canola	cytosol	61.29	61.69
AT4G35060.1	Thale cress	cytosol	60.65	61.44
GSMUA_Achr3P04460_001	Banana	cytosol	58.71	61.07
TraesCS7B01G285400.1	Wheat	mitochondrion, plastid	62.58	60.25
TraesCS7A01G382700.1	Wheat	mitochondrion, plastid	62.58	60.25
GSMUA_Achr4P01830_001	Banana	cytosol	56.77	59.06
TraesCS7D01G379100.1	Wheat	mitochondrion, plastid	61.29	59.01
GSMUA_Achr3P07890_001	Banana	cytosol, mitochondrion, plastid	55.48	57.72
KRH24318	Soybean	cytosol, nucleus, plastid	31.61	56.98
GSMUA_Achr10P...	Banana	cytosol	49.68	52.74
GSMUA_Achr7P11680_001	Banana	cytosol	48.39	50.34
GSMUA_Achr1P12840_001	Banana	cytosol	49.03	50.33
GSMUA_Achr2P07910_001	Banana	cytosol	48.39	49.67
HORVU6Hr1G009000.1	Barley	cytosol, plastid, vacuole	69.68	48.0
KRH28829	Soybean	cytosol	34.84	44.63
GSMUA_Achr3P15460_001	Banana	cytosol	33.55	37.96
GSMUA_Achr11P...	Banana	cytosol	32.26	37.88
GSMUA_Achr10P...	Banana	cytosol	34.19	37.59
GSMUA_Achr3P27280_001	Banana	cytosol	32.9	36.96
GSMUA_Achr2P10210_001	Banana	cytosol	34.84	36.49
GSMUA_Achr7P13900_001	Banana	cytosol	33.55	35.37
GSMUA_Achr6P14470_001	Banana	cytosol	30.97	33.33
HORVU2Hr1G011060.1	Barley	nucleus, plastid	29.68	29.68
GSMUA_Achr11P...	Banana	cytosol	34.19	28.65
GSMUA_Achr2P10220_001	Banana	mitochondrion, plastid	34.19	27.75
GSMUA_Achr1P00790_001	Banana	cytosol	34.84	27.55

Protein Annotations

Gene3D:3.30.70.100	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0006810	GO:GO:0008150
GO:GO:0030001	GO:GO:0046872	EnsemblPlantsGene:GSMUA_Achr4G25770_001	EnsemblPlants:GSMUA_Achr4P25770_001	EnsemblPlants:GSMUA_Achr4T25770_001	InterPro:HMA_dom
InterPro:HMA_dom_sf	InterPro:IPR006121	UniProt:M0SS38	PFAM:PF00403	PFscan:PS50846	PANTHER:PTHR22814
PANTHER:PTHR22814:SF168	SUPFAM:SSF55008	UniParc:UPI0002961F43	:	:	:

Description

heavy metal-associated domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr4G25770_001]

Coordinates

chr4:+:25165256..25166166

Molecular Weight (calculated)

17271.7 Da

IEP (calculated)

9.537

GRAVY (calculated)

-0.533

Length

155 amino acids

Sequence
(BLAST)

001: MGFLEHISEI CSFPSSHNKF KKKNQLQTVE IKVRMDCEGC ERKVRKAVEG MKGVSSVEIE AKQHKVTVVG YVDPKKVIRR VAWKTGKKAE PWPYVPYDVV
101: AHPYAPGAYD KKAPPGYVRN VVDDPAAAPL ARASSTEVKY TTAFSDDNPN NCSVM

Best Arabidopsis Sequence Match ( AT4G38580.2 )
(BLAST)

001: MGVLDHVSEM FDCSHGHKIK KRKQLQTVEI KVKMDCEGCE RKVRRSVEGM KGVSSVTLEP KAHKVTVVGY VDPNKVVARM SHRTGKKVEL WPYVPYDVVA
101: HPYAAGVYDK KAPSGYVRRV DDPGVSQLAR ASSTEVRYTT AFSDENPAAC VVM

Arabidopsis Description

HIPP26HIPP26 [Source:UniProtKB/TrEMBL;Acc:A0A178V1F5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.