Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr1P12840_001 | Banana | cytosol | 85.43 | 85.43 |
| Solyc02g091300.2.1 | Tomato | cytosol, plastid | 68.87 | 70.27 |
| KRG90986 | Soybean | cytosol, plastid | 67.55 | 69.86 |
| VIT_14s0006g01800.t01 | Wine grape | cytosol | 67.55 | 69.86 |
| PGSC0003DMT400078635 | Potato | cytosol, plastid | 68.21 | 69.59 |
| KRH35768 | Soybean | cytosol, plastid | 66.89 | 69.18 |
| VIT_01s0011g04700.t01 | Wine grape | cytosol | 66.89 | 68.71 |
| Solyc04g007630.1.1 | Tomato | cytosol | 62.91 | 64.63 |
| PGSC0003DMT400015350 | Potato | cytosol | 62.25 | 63.95 |
| KRH38224 | Soybean | cytosol | 61.59 | 63.27 |
| KRG93769 | Soybean | cytosol | 39.74 | 61.86 |
| AT5G17450.1 | Thale cress | cytosol | 59.6 | 60.4 |
| KRG93786 | Soybean | cytosol, plastid | 38.41 | 59.79 |
| CDX85452 | Canola | cytosol | 58.94 | 59.73 |
| CDY55938 | Canola | cytosol | 58.94 | 59.73 |
| Bra023619.1-P | Field mustard | cytosol | 58.94 | 59.73 |
| KRG93169 | Soybean | cytosol | 56.95 | 59.72 |
| CDY38431 | Canola | cytosol | 58.28 | 59.06 |
| Bra013976.1-P | Field mustard | cytosol | 57.62 | 58.39 |
| CDY16919 | Canola | cytosol | 57.62 | 58.39 |
| KRH76245 | Soybean | cytosol | 33.11 | 56.82 |
| Solyc03g043640.2.1 | Tomato | cytosol | 54.97 | 56.46 |
| GSMUA_Achr3P04460_001 | Banana | cytosol | 55.63 | 56.38 |
| KRH15973 | Soybean | cytosol, plastid | 40.4 | 55.96 |
| KRH70455 | Soybean | cytosol | 53.64 | 55.86 |
| GSMUA_Achr4P01830_001 | Banana | cytosol | 54.97 | 55.7 |
| KRH01671 | Soybean | cytosol | 52.98 | 55.17 |
| KRH38229 | Soybean | cytosol | 52.98 | 54.42 |
| GSMUA_Achr7P11680_001 | Banana | cytosol | 52.98 | 53.69 |
| GSMUA_Achr3P07890_001 | Banana | cytosol, mitochondrion, plastid | 51.66 | 52.35 |
| GSMUA_Achr10P... | Banana | cytosol | 49.67 | 51.37 |
| PGSC0003DMT400043033 | Potato | cytosol | 53.64 | 51.27 |
| GSMUA_Achr1P02370_001 | Banana | cytosol, plastid | 50.99 | 49.68 |
| GSMUA_Achr4P25770_001 | Banana | cytosol, plastid | 49.67 | 48.39 |
| GSMUA_Achr11P... | Banana | cytosol | 30.46 | 34.85 |
| GSMUA_Achr10P... | Banana | cytosol | 32.45 | 34.75 |
| GSMUA_Achr3P15460_001 | Banana | cytosol | 29.14 | 32.12 |
| GSMUA_Achr3P27280_001 | Banana | cytosol | 29.14 | 31.88 |
| GSMUA_Achr2P10210_001 | Banana | cytosol | 30.46 | 31.08 |
| GSMUA_Achr11P... | Banana | cytosol | 37.75 | 30.81 |
| GSMUA_Achr7P13900_001 | Banana | cytosol | 29.8 | 30.61 |
| GSMUA_Achr2P10220_001 | Banana | mitochondrion, plastid | 37.75 | 29.84 |
| GSMUA_Achr1P00790_001 | Banana | cytosol | 37.09 | 28.57 |
| GSMUA_Achr6P14470_001 | Banana | cytosol | 27.15 | 28.47 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr2P07910_001 | EnsemblPlants:GSMUA_Achr2T07910_001 | EnsemblPlantsGene:GSMUA_Achr2G07910_001 | Gene3D:3.30.70.100 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0006810 | GO:GO:0008150 | GO:GO:0030001 | GO:GO:0046872 | InterPro:HMA_dom | InterPro:HMA_dom_sf |
| InterPro:IPR006121 | PANTHER:PTHR22814 | PANTHER:PTHR22814:SF176 | PFAM:PF00403 | PFscan:PS50846 | SEG:seg |
| SUPFAM:SSF55008 | UniParc:UPI0002962E9F | UniProt:M0S632 | MapMan:35.1 | : | : |
Description
Putative Copper-exporting P-type ATPase A [Source:GMGC_GENE;Acc:GSMUA_Achr2G07910_001]
Coordinates
chr2:+:12139288..12140306
Molecular Weight (calculated)
16910.3 Da
IEP (calculated)
9.838
GRAVY (calculated)
-0.521
Length
151 amino acids
Sequence
(BLAST)
(BLAST)
001: MGALDHLSDM CSVTETKRTL QIRKRRPLQT VDLKVKMDCD GCERRVKHAV SSIRGVTNVN VNRKQSRVTV TGHIEAKQVL ERIKSTGKRA ELWPYVPYNL
101: VAYPYVAGAY DKKAPSGFVR NAAQAVPNPN APEEQYMSLF SDDNPNACSI M
101: VAYPYVAGAY DKKAPSGFVR NAAQAVPNPN APEEQYMSLF SDDNPNACSI M
001: MGALDSLSEY ISDYFRVTRK RRKRKVMQTV NIKVKMDCDG CERRVKNAVS SMKGVKSVEV NRKIHKVTVS GYVEPKKVLK RIERTGKKAE IWPYVPYNMV
101: AYPYAVGTYD KKAPAGYVRK SEQSQLQLLP GAPENHYISL FSDENPNACT VM
101: AYPYAVGTYD KKAPAGYVRK SEQSQLQLLP GAPENHYISL FSDENPNACT VM
Arabidopsis Description
HIPP20HIPP20 [Source:UniProtKB/TrEMBL;Acc:A0A178W5Y0]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.