Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 4
- cytosol 4
- nucleus 1
- mitochondrion 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
KRG93769 | Soybean | cytosol | 90.91 | 82.47 |
KRG93786 | Soybean | cytosol, plastid | 88.64 | 80.41 |
KRH15973 | Soybean | cytosol, plastid | 89.77 | 72.48 |
KRG93169 | Soybean | cytosol | 92.05 | 56.25 |
KRH24318 | Soybean | cytosol, nucleus, plastid | 44.32 | 45.35 |
VIT_14s0006g01800.t01 | Wine grape | cytosol | 72.73 | 43.84 |
KRH01671 | Soybean | cytosol | 69.32 | 42.07 |
KRH70455 | Soybean | cytosol | 69.32 | 42.07 |
Solyc02g091300.2.1 | Tomato | cytosol, plastid | 64.77 | 38.51 |
PGSC0003DMT400078635 | Potato | cytosol, plastid | 64.77 | 38.51 |
AT5G17450.1 | Thale cress | cytosol | 64.77 | 38.26 |
CDY55938 | Canola | cytosol | 64.77 | 38.26 |
CDX85452 | Canola | cytosol | 64.77 | 38.26 |
Bra023619.1-P | Field mustard | cytosol | 64.77 | 38.26 |
KRG90986 | Soybean | cytosol, plastid | 62.5 | 37.67 |
KRH35768 | Soybean | cytosol, plastid | 62.5 | 37.67 |
CDY38431 | Canola | cytosol | 63.64 | 37.58 |
Bra013976.1-P | Field mustard | cytosol | 62.5 | 36.91 |
CDY16919 | Canola | cytosol | 62.5 | 36.91 |
KRH38224 | Soybean | cytosol | 61.36 | 36.73 |
Solyc03g043640.2.1 | Tomato | cytosol | 60.23 | 36.05 |
GSMUA_Achr2P07910_001 | Banana | cytosol | 56.82 | 33.11 |
GSMUA_Achr1P12840_001 | Banana | cytosol | 55.68 | 32.45 |
KRH43240 | Soybean | cytosol | 52.27 | 30.07 |
KRH59402 | Soybean | cytosol | 52.27 | 30.07 |
PGSC0003DMT400043033 | Potato | cytosol | 52.27 | 29.11 |
KRH38229 | Soybean | cytosol | 47.73 | 28.57 |
KRH29001 | Soybean | cytosol | 48.86 | 27.56 |
KRH60697 | Soybean | cytosol | 47.73 | 27.27 |
KRH62410 | Soybean | cytosol, plastid | 45.45 | 26.85 |
KRH31264 | Soybean | cytosol | 46.59 | 26.45 |
KRH53129 | Soybean | cytosol | 43.18 | 25.5 |
KRG97609 | Soybean | cytosol | 44.32 | 24.84 |
KRG92555 | Soybean | cytosol | 44.32 | 21.91 |
KRH34236 | Soybean | cytosol | 44.32 | 21.91 |
KRH28829 | Soybean | cytosol | 28.41 | 20.66 |
KRH22286 | Soybean | cytosol | 31.82 | 19.72 |
KRH27043 | Soybean | cytosol | 31.82 | 19.72 |
KRH57823 | Soybean | cytosol | 31.82 | 18.92 |
KRH09015 | Soybean | cytosol | 28.41 | 18.12 |
KRH58951 | Soybean | cytosol | 28.41 | 17.86 |
KRH38480 | Soybean | cytosol | 19.32 | 14.29 |
Protein Annotations
Gene3D:3.30.70.100 | MapMan:35.1 | EMBL:ACUP02000589 | EnsemblPlantsGene:GLYMA_01G141700 | GO:GO:0003674 | GO:GO:0005488 |
GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006810 | GO:GO:0008150 |
GO:GO:0009987 | GO:GO:0019725 | GO:GO:0030001 | GO:GO:0046872 | GO:GO:0046914 | GO:GO:0046916 |
InterPro:HMA_dom | InterPro:HMA_dom_sf | UniProt:I1J7W5 | InterPro:IPR006121 | EnsemblPlants:KRH76245 | ProteinID:KRH76245 |
ProteinID:KRH76245.1 | PFAM:PF00403 | PFscan:PS50846 | PANTHER:PTHR22814 | PANTHER:PTHR22814:SF110 | SUPFAM:SSF55008 |
UniParc:UPI00023370A2 | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr1:-:47317178..47317531
Molecular Weight (calculated)
10016.4 Da
IEP (calculated)
11.225
GRAVY (calculated)
-0.487
Length
88 amino acids
Sequence
(BLAST)
(BLAST)
1: MGALDYLSNF CTVTSTRTKQ KAMQTTEIKV RMDCDGCERR VRNAVSSIKG VKSVEVNRKE SRVVVRGYVD PKKVLKRVRR TASLLRLP
001: MGALDSLSEY ISDYFRVTRK RRKRKVMQTV NIKVKMDCDG CERRVKNAVS SMKGVKSVEV NRKIHKVTVS GYVEPKKVLK RIERTGKKAE IWPYVPYNMV
101: AYPYAVGTYD KKAPAGYVRK SEQSQLQLLP GAPENHYISL FSDENPNACT VM
101: AYPYAVGTYD KKAPAGYVRK SEQSQLQLLP GAPENHYISL FSDENPNACT VM
Arabidopsis Description
HIPP20HIPP20 [Source:UniProtKB/TrEMBL;Acc:A0A178W5Y0]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.