CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 4
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH08190
KRH10001
KRH23330
KRH28715
KRH44167
KRH47141
KRH69884
KRH76747

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G17450.1	KRH10001	AT3G13710.1	21798944
AT5G17450.1	KRH23330	AT3G13710.1	21798944
AT5G17450.1	KRH44167	AT3G13710.1	21798944
AT5G17450.1	KRH47141	AT3G13710.1	21798944
AT5G17450.1	KRH08190	AT3G50910.1	21798944
AT5G17450.1	KRH28715	AT3G50910.1	21798944
AT5G17450.1	KRH69884	AT3G50910.1	21798944
AT5G17450.1	KRH76747	AT3G50910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG93786	Soybean	cytosol, plastid	97.94	97.94
KRH76245	Soybean	cytosol	82.47	90.91
KRH15973	Soybean	cytosol, plastid	93.81	83.49
KRG93169	Soybean	cytosol	98.97	66.67
VIT_14s0006g01800.t01	Wine grape	cytosol	75.26	50.0
KRH70455	Soybean	cytosol	72.16	48.28
KRH01671	Soybean	cytosol	71.13	47.59
KRH24318	Soybean	cytosol, nucleus, plastid	40.21	45.35
Solyc02g091300.2.1	Tomato	cytosol, plastid	69.07	45.27
PGSC0003DMT400078635	Potato	cytosol, plastid	69.07	45.27
KRG90986	Soybean	cytosol, plastid	67.01	44.52
KRH35768	Soybean	cytosol, plastid	67.01	44.52
CDY55938	Canola	cytosol	68.04	44.3
CDX85452	Canola	cytosol	68.04	44.3
Bra023619.1-P	Field mustard	cytosol	68.04	44.3
AT5G17450.1	Thale cress	cytosol	68.04	44.3
CDY38431	Canola	cytosol	67.01	43.62
KRH38224	Soybean	cytosol	65.98	43.54
Bra013976.1-P	Field mustard	cytosol	65.98	42.95
CDY16919	Canola	cytosol	65.98	42.95
Solyc03g043640.2.1	Tomato	cytosol	63.92	42.18
GSMUA_Achr2P07910_001	Banana	cytosol	61.86	39.74
GSMUA_Achr1P12840_001	Banana	cytosol	60.82	39.07
KRH43240	Soybean	cytosol	56.7	35.95
KRH59402	Soybean	cytosol	56.7	35.95
PGSC0003DMT400043033	Potato	cytosol	56.7	34.81
KRH38229	Soybean	cytosol	50.52	33.33
KRH31264	Soybean	cytosol	50.52	31.61
KRH29001	Soybean	cytosol	50.52	31.41
KRH60697	Soybean	cytosol	49.48	31.17
KRH62410	Soybean	cytosol, plastid	47.42	30.87
KRG97609	Soybean	cytosol	48.45	29.94
KRH53129	Soybean	cytosol	45.36	29.53
KRH34236	Soybean	cytosol	46.39	25.28
KRG92555	Soybean	cytosol	46.39	25.28
KRH28829	Soybean	cytosol	29.9	23.97
KRH22286	Soybean	cytosol	32.99	22.54
KRH27043	Soybean	cytosol	32.99	22.54
KRH58951	Soybean	cytosol	30.93	21.43
KRH57823	Soybean	cytosol	31.96	20.95
KRH09015	Soybean	cytosol	28.87	20.29
KRH38480	Soybean	cytosol	20.62	16.81

Protein Annotations

Gene3D:3.30.70.100	MapMan:35.1	EMBL:ACUP02011623	EnsemblPlantsGene:GLYMA_19G039500	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0008150
GO:GO:0009987	GO:GO:0019725	GO:GO:0030001	GO:GO:0046872	GO:GO:0046914	GO:GO:0046916
InterPro:HMA_dom	InterPro:HMA_dom_sf	UniProt:I1N6J2	InterPro:IPR006121	EnsemblPlants:KRG93769	ProteinID:KRG93769
ProteinID:KRG93769.1	PFAM:PF00403	PFscan:PS50846	PANTHER:PTHR22814	PANTHER:PTHR22814:SF110	SUPFAM:SSF55008
UniParc:UPI000233E790	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr19:+:5666679..5667059

Molecular Weight (calculated)

11135.6 Da

IEP (calculated)

10.842

GRAVY (calculated)

-0.524

Length

97 amino acids

Sequence
(BLAST)

1: MGALDYLSNF CTVTSTRTKQ KAMQTTEIKV RMDCDGCERR VRNAVSSIKG VKSVEVNRKE SRVVVRGYVD PKKVLKRVRS TGKVRAQFWP YVEQHLV

Best Arabidopsis Sequence Match ( AT5G17450.1 )
(BLAST)

001: MGAFDYISSF CSYTYANAKT KRKPLQTVDI KVKMDCDGCE RRVRNVVRRM KGVKSVEVNR KQSRITVNGH VDPNKVLKRV KSTGKKAEFW PYIPQHMVYY
101: PFAPGMYDKR APAGHIRNPT QSFPTANAPE ENYVSLFSDD NVHAACSIM

Arabidopsis Description

HIPP21Heavy metal-associated isoprenylated plant protein 21 [Source:UniProtKB/Swiss-Prot;Acc:Q9LF57]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.