Factsheet for Bra013976.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra004399.1-P
Bra007869.1-P
Bra012880.1-P
Bra021504.1-P
Bra027406.1-P
Bra036850.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G17450.1	Bra004399.1-P	AT1G69600.1	18974936
AT5G17450.1	Bra007869.1-P	AT1G69600.1	18974936
AT5G17450.1	Bra021504.1-P	AT3G13710.1	21798944
AT5G17450.1	Bra027406.1-P	AT3G13710.1	21798944
AT5G17450.1	Bra012880.1-P	AT3G50910.1	21798944
AT5G17450.1	Bra036850.1-P	AT3G50910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY38431	Canola	cytosol	99.33	99.33
CDY16919	Canola	cytosol	97.99	97.99
AT5G17450.1	Thale cress	cytosol	93.96	93.96
Bra023619.1-P	Field mustard	cytosol	93.96	93.96
VIT_14s0006g01800.t01	Wine grape	cytosol	66.44	67.81
KRH01671	Soybean	cytosol	64.43	66.21
KRG93769	Soybean	cytosol	42.95	65.98
KRH70455	Soybean	cytosol	63.76	65.52
Solyc03g043640.2.1	Tomato	cytosol	63.09	63.95
KRG93786	Soybean	cytosol, plastid	41.61	63.92
KRG93169	Soybean	cytosol	61.74	63.89
KRH76245	Soybean	cytosol	36.91	62.5
PGSC0003DMT400078635	Potato	cytosol, plastid	60.4	60.81
Solyc02g091300.2.1	Tomato	cytosol, plastid	60.4	60.81
KRH15973	Soybean	cytosol, plastid	43.62	59.63
GSMUA_Achr2P07910_001	Banana	cytosol	58.39	57.62
PGSC0003DMT400043033	Potato	cytosol	61.07	57.59
GSMUA_Achr1P12840_001	Banana	cytosol	55.7	54.97
Bra016162.1-P	Field mustard	cytosol	55.03	54.67
Bra012353.1-P	Field mustard	cytosol	55.7	54.61
Bra024556.1-P	Field mustard	cytosol	53.02	53.74
Bra009662.1-P	Field mustard	cytosol	42.95	52.89
Bra033570.1-P	Field mustard	cytosol	46.98	45.75
Bra010738.1-P	Field mustard	cytosol	46.31	45.1
Bra011840.1-P	Field mustard	cytosol	46.31	43.67
Bra037865.1-P	Field mustard	cytosol	40.27	40.0
Bra034669.1-P	Field mustard	cytosol	39.6	38.31
Bra011581.1-P	Field mustard	cytosol	38.93	37.91
Bra018022.1-P	Field mustard	cytosol	32.89	35.51
Bra007280.1-P	Field mustard	cytosol	36.24	34.18
Bra014664.1-P	Field mustard	cytosol	30.2	33.33
Bra028528.1-P	Field mustard	cytosol	37.58	31.46
Bra037919.1-P	Field mustard	plastid	36.91	30.22
Bra032428.1-P	Field mustard	cytosol	30.87	29.49
Bra030119.1-P	Field mustard	cytosol	26.85	28.37

Protein Annotations

EnsemblPlants:Bra013976.1	EnsemblPlants:Bra013976.1-P	EnsemblPlantsGene:Bra013976	Gene3D:3.30.70.100	GO:GO:0003674	GO:GO:0005488
GO:GO:0006810	GO:GO:0008150	GO:GO:0030001	GO:GO:0046872	InterPro:HMA_dom	InterPro:HMA_dom_sf
InterPro:IPR006121	PANTHER:PTHR22814	PANTHER:PTHR22814:SF47	PFAM:PF00403	PFscan:PS50846	SUPFAM:SSF55008
UniParc:UPI0002547071	UniProt:M4DBW6	MapMan:35.1	:	:	:

Description

AT5G17450 (E=3e-082) | heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related

Coordinates

chrA08:+:4906178..4907625

Molecular Weight (calculated)

16908.4 Da

IEP (calculated)

10.255

GRAVY (calculated)

-0.579

Length

149 amino acids

Sequence
(BLAST)

001: MGAFDYISSF CSYTYSNAKT KRKPLQTVEI KVKMDCDGCE RKLRNVVRRM KGVKTVEVNR KQSRLTVNGH VDPNKVLKRV KSTGKKAEFW PYIPQHMVYY
101: PFAPGMYDKR APAGHIRNPT QAFPAANAPG ENYVSLFSDD NVHAACSIM

Best Arabidopsis Sequence Match ( AT5G17450.1 )
(BLAST)

001: MGAFDYISSF CSYTYANAKT KRKPLQTVDI KVKMDCDGCE RRVRNVVRRM KGVKSVEVNR KQSRITVNGH VDPNKVLKRV KSTGKKAEFW PYIPQHMVYY
101: PFAPGMYDKR APAGHIRNPT QSFPTANAPE ENYVSLFSDD NVHAACSIM

Arabidopsis Description

HIPP21Heavy metal-associated isoprenylated plant protein 21 [Source:UniProtKB/Swiss-Prot;Acc:Q9LF57]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.