Factsheet for Bra036850.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
mitochondrion 1
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000304.1-P
Bra001003.1-P
Bra003403.1-P
Bra003423.1-P
Bra003624.1-P
Bra005866.1-P
Bra007514.1-P
Bra007528.1-P
Bra007547.1-P
Bra008392.1-P
Bra013962.1-P
Bra014481.1-P
Bra014494.1-P
Bra014506.1-P
Bra018531.1-P
Bra024408.1-P
Bra031109.1-P
Bra031849.1-P
Bra035087.1-P
Bra036122.1-P
Bra036243.1-P
Bra036793.1-P
Bra038904.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G50910.1	Bra036122.1-P	AT1G54770.1	21798944
AT3G50910.1	Bra003624.1-P	AT1G79040.1	21798944
AT3G50910.1	Bra008392.1-P	AT1G79040.1	21798944
AT3G50910.1	Bra035087.1-P	AT1G79040.1	21798944
AT3G50910.1	Bra031109.1-P	AT2G20060.1	21798944
AT3G50910.1	Bra000304.1-P	AT2G43370.1	21798944
AT3G50910.1	Bra001003.1-P	AT3G01550.1	21798944
AT3G50910.1	Bra036793.1-P	AT3G51510.1	21798944
AT3G50910.1	Bra038904.1-P	AT3G51510.1	21798944
AT3G50910.1	Bra003403.1-P	AT3G60200.1	21798944
AT3G50910.1	Bra007514.1-P	AT3G60200.1	21798944
AT3G50910.1	Bra014506.1-P	AT3G60200.1	21798944
AT3G50910.1	Bra007528.1-P	AT3G60360.1	21798944
AT3G50910.1	Bra014494.1-P	AT3G60360.1	21798944
AT3G50910.1	Bra003423.1-P	AT3G60600.1	21798944
AT3G50910.1	Bra007547.1-P	AT3G60600.1	21798944
AT3G50910.1	Bra014481.1-P	AT3G60600.1	21798944
AT3G50910.1	Bra018531.1-P	AT4G02725.1	21798944
AT3G50910.1	Bra036243.1-P	AT4G02725.1	21798944
AT3G50910.1	Bra005866.1-P	AT5G05760.1	21798944
AT3G50910.1	Bra013962.1-P	AT5G17630.1	21798944
AT3G50910.1	Bra024408.1-P	AT5G65683.1	21798944
AT3G50910.1	Bra031849.1-P	AT5G65683.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX77962	Canola	nucleus, plastid	96.39	96.39
Bra012880.1-P	Field mustard	nucleus	77.35	78.68
AT3G50910.1	Thale cress	cytosol	80.96	75.17
CDY67893	Canola	nucleus	58.31	70.14
Bra037167.1-P	Field mustard	mitochondrion	29.16	57.35
Zm00001d020667_P001	Maize	nucleus	16.14	50.38
KRH08190	Soybean	nucleus	47.71	45.41
KRH76747	Soybean	plastid	46.27	44.04
KRH28715	Soybean	cytosol	40.72	41.22
GSMUA_Achr2P22980_001	Banana	cytosol, nucleus, peroxisome, plastid	41.2	41.11
Solyc02g085000.2.1	Tomato	nucleus	45.3	40.69
VIT_04s0023g02110.t01	Wine grape	endoplasmic reticulum	48.67	40.56
GSMUA_Achr1P12060_001	Banana	plastid	38.31	40.36
GSMUA_Achr6P08980_001	Banana	nucleus	39.76	40.24
PGSC0003DMT400009054	Potato	nucleus, plastid	44.1	38.05
Os02t0704600-01	Rice	nucleus	41.2	37.5
OQU85551	Sorghum	cytosol, plastid	40.24	36.87
TraesCS6A01G272000.1	Wheat	nucleus	40.0	36.73
OQU78405	Sorghum	nucleus	37.59	36.62
TraesCS6D01G252200.1	Wheat	nucleus	39.52	36.53
Zm00001d038964_P001	Maize	nucleus	37.35	36.47
HORVU6Hr1G068770.1	Barley	nucleus	39.52	36.12
Zm00001d051562_P001	Maize	plastid	38.31	36.05
TraesCS6B01G299600.1	Wheat	nucleus	39.52	35.81
Zm00001d017768_P006	Maize	cytosol	40.48	35.37
KRH69884	Soybean	nucleus	44.82	25.69

Protein Annotations

EnsemblPlants:Bra036850.1	EnsemblPlants:Bra036850.1-P	EnsemblPlantsGene:Bra036850	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
ncoils:Coil	PANTHER:PTHR35490	SEG:seg	TMHMM:TMhelix	UniParc:UPI0002542BFB	UniProt:M4F6Z0
MapMan:35.2	:	:	:	:	:

Description

AT3G50910 (E=3e-112) | unknown protein

Coordinates

chrA09:+:25407924..25409363

Molecular Weight (calculated)

46269.7 Da

IEP (calculated)

4.572

GRAVY (calculated)

-0.727

Length

415 amino acids

Sequence
(BLAST)

001: MPTFSAIALD RMLEPGAAST SPSLHYSKPP LSKLENGTRP QMSPALYATP DAIPLPNSPS SSSFPPSPYI INHKSRGPRL LKSSSEANVA SQQKPLEDEG
101: VTGGADVKVS PRRKSTSFSF PISEATEEDY ANGVYDRQVG DFSFDGKLGN GKLELDSAAN NDLEWENNLP EPFTAKVDKE SESEDFYDPG ESASFTSNTD
201: AGEEGSHRLA TPVGEFYDAW DELSSDSGMQ SSVNNNETEL REIRLSLLME IEKRKQTEEA LERMQTHWQM LREQLAQVGV FVPIDPTTST SNMNLSEELR
301: CQLEVARFVS DSLGRGMAKA EVEMEMEAML ETKNFEITRL SDRVHYYEAV NREMSQRNQE AIEVARRERQ KRKKRQRWIW GSIATTITLG SAALAWSYIP
401: ASRPSSEASQ TLKDD

Best Arabidopsis Sequence Match ( AT3G50910.1 )
(BLAST)

001: MPTFSAIALD RMLEPGASTS VESVPSTTNL FYSKPPISKL EKGKGKLPNE RTVTRPLMSP ALYATPDAIP LPNSPSSFPP SPYIINHKSR GPPRLLKSSS
101: EANVVSSSHQ KTLEEETITA ETDVKVSPRR RSTSFSFPIT EVTEDDYSNG VHARTVGNYN FDGIVDGPVG NWSPLDGKSG NGKSELDNAA NGLERVNGLS
201: EPVPIKTDKE SESEDFYDPG ESASFTSNTD VEGDAGDESS QRLATPVGEF YDAWDELSTD SGMQSSVNNI ESELSEIRLS LLMEIEKRKQ TEEALEQMQI
301: HWQRLREQMA QVGLFVPIDP TASTNNMNLS EELRCQLEIA RFVSDSLGRG MAKAEVEMEM ESMLETKNFE ITRLSDRLHY YEAVNREMSQ RNQEAIEVAR
401: RERQKRKKRQ RWIWGSIAAT ITLGSAALAW SYIPAAKPSS EVSLKDE

Arabidopsis Description

AT3g50910/F18B3_190 [Source:UniProtKB/TrEMBL;Acc:Q94BX2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.