Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra036850.1-P | Field mustard | plastid | 75.17 | 80.96 |
| CDX77962 | Canola | nucleus, plastid | 73.83 | 79.52 |
| CDX90677 | Canola | nucleus | 71.14 | 77.94 |
| CDX73773 | Canola | cytosol | 71.36 | 77.43 |
| Bra012880.1-P | Field mustard | nucleus | 70.47 | 77.21 |
| CDY28989 | Canola | nucleus | 71.36 | 76.13 |
| CDY67893 | Canola | nucleus | 52.8 | 68.41 |
| AT5G66480.1 | Thale cress | plastid | 55.93 | 56.31 |
| Zm00001d020667_P001 | Maize | nucleus | 14.09 | 47.37 |
| KRH08190 | Soybean | nucleus | 43.18 | 44.27 |
| KRH76747 | Soybean | plastid | 42.73 | 43.81 |
| GSMUA_Achr6P08980_001 | Banana | nucleus | 38.7 | 42.2 |
| GSMUA_Achr2P22980_001 | Banana | cytosol, nucleus, peroxisome, plastid | 38.7 | 41.59 |
| KRH28715 | Soybean | cytosol | 38.03 | 41.46 |
| Solyc02g085000.2.1 | Tomato | nucleus | 42.51 | 41.13 |
| VIT_04s0023g02110.t01 | Wine grape | endoplasmic reticulum | 45.41 | 40.76 |
| GSMUA_Achr1P12060_001 | Banana | plastid | 34.23 | 38.83 |
| PGSC0003DMT400009054 | Potato | nucleus, plastid | 41.61 | 38.67 |
| TraesCS6A01G272000.1 | Wheat | nucleus | 37.58 | 37.17 |
| HORVU6Hr1G068770.1 | Barley | nucleus | 37.58 | 37.0 |
| TraesCS6D01G252200.1 | Wheat | nucleus | 37.14 | 36.97 |
| Os02t0704600-01 | Rice | nucleus | 37.36 | 36.62 |
| TraesCS6B01G299600.1 | Wheat | nucleus | 36.91 | 36.03 |
| OQU78405 | Sorghum | nucleus | 34.0 | 35.68 |
| Zm00001d038964_P001 | Maize | nucleus | 33.56 | 35.29 |
| OQU85551 | Sorghum | cytosol, plastid | 35.57 | 35.1 |
| Zm00001d051562_P001 | Maize | plastid | 34.45 | 34.92 |
| Zm00001d017768_P006 | Maize | cytosol | 36.02 | 33.89 |
| KRH69884 | Soybean | nucleus | 41.83 | 25.83 |
Protein Annotations
| MapMan:35.2 | EntrezGene:824255 | ProteinID:AEE78724.1 | ArrayExpress:AT3G50910 | EnsemblPlantsGene:AT3G50910 | RefSeq:AT3G50910 |
| TAIR:AT3G50910 | RefSeq:AT3G50910-TAIR-G | EnsemblPlants:AT3G50910.1 | TAIR:AT3G50910.1 | EMBL:AY039605 | EMBL:BT003021 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0005575 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 |
| RefSeq:NP_566941.1 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PANTHER:PTHR35490 |
| UniProt:Q94BX2 | TMHMM:TMhelix | UniParc:UPI000000BE96 | SEG:seg | : | : |
Description
AT3g50910/F18B3_190 [Source:UniProtKB/TrEMBL;Acc:Q94BX2]
Coordinates
chr3:+:18919327..18922301
Molecular Weight (calculated)
49638.9 Da
IEP (calculated)
4.637
GRAVY (calculated)
-0.652
Length
447 amino acids
Sequence
(BLAST)
(BLAST)
001: MPTFSAIALD RMLEPGASTS VESVPSTTNL FYSKPPISKL EKGKGKLPNE RTVTRPLMSP ALYATPDAIP LPNSPSSFPP SPYIINHKSR GPPRLLKSSS
101: EANVVSSSHQ KTLEEETITA ETDVKVSPRR RSTSFSFPIT EVTEDDYSNG VHARTVGNYN FDGIVDGPVG NWSPLDGKSG NGKSELDNAA NGLERVNGLS
201: EPVPIKTDKE SESEDFYDPG ESASFTSNTD VEGDAGDESS QRLATPVGEF YDAWDELSTD SGMQSSVNNI ESELSEIRLS LLMEIEKRKQ TEEALEQMQI
301: HWQRLREQMA QVGLFVPIDP TASTNNMNLS EELRCQLEIA RFVSDSLGRG MAKAEVEMEM ESMLETKNFE ITRLSDRLHY YEAVNREMSQ RNQEAIEVAR
401: RERQKRKKRQ RWIWGSIAAT ITLGSAALAW SYIPAAKPSS EVSLKDE
101: EANVVSSSHQ KTLEEETITA ETDVKVSPRR RSTSFSFPIT EVTEDDYSNG VHARTVGNYN FDGIVDGPVG NWSPLDGKSG NGKSELDNAA NGLERVNGLS
201: EPVPIKTDKE SESEDFYDPG ESASFTSNTD VEGDAGDESS QRLATPVGEF YDAWDELSTD SGMQSSVNNI ESELSEIRLS LLMEIEKRKQ TEEALEQMQI
301: HWQRLREQMA QVGLFVPIDP TASTNNMNLS EELRCQLEIA RFVSDSLGRG MAKAEVEMEM ESMLETKNFE ITRLSDRLHY YEAVNREMSQ RNQEAIEVAR
401: RERQKRKKRQ RWIWGSIAAT ITLGSAALAW SYIPAAKPSS EVSLKDE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.