Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX90677 | Canola | nucleus | 88.78 | 91.18 |
| CDX73773 | Canola | cytosol | 74.94 | 76.21 |
| CDX77962 | Canola | nucleus, plastid | 74.7 | 75.42 |
| AT3G50910.1 | Thale cress | cytosol | 76.13 | 71.36 |
| CDY67893 | Canola | nucleus | 50.36 | 61.16 |
| Zm00001d020667_P001 | Maize | nucleus | 15.99 | 50.38 |
| CDY18608 | Canola | nucleus | 42.48 | 49.04 |
| KRH08190 | Soybean | nucleus | 45.35 | 43.58 |
| GSMUA_Achr2P22980_001 | Banana | cytosol, nucleus, peroxisome, plastid | 41.29 | 41.59 |
| GSMUA_Achr6P08980_001 | Banana | nucleus | 40.33 | 41.22 |
| KRH76747 | Soybean | plastid | 42.72 | 41.05 |
| Solyc02g085000.2.1 | Tomato | nucleus | 45.11 | 40.91 |
| KRH28715 | Soybean | cytosol | 38.42 | 39.27 |
| VIT_04s0023g02110.t01 | Wine grape | endoplasmic reticulum | 46.3 | 38.96 |
| GSMUA_Achr1P12060_001 | Banana | plastid | 36.52 | 38.83 |
| PGSC0003DMT400009054 | Potato | nucleus, plastid | 42.96 | 37.42 |
| TraesCS6A01G272000.1 | Wheat | nucleus | 39.38 | 36.5 |
| TraesCS6D01G252200.1 | Wheat | nucleus | 38.9 | 36.3 |
| Os02t0704600-01 | Rice | nucleus | 39.38 | 36.18 |
| HORVU6Hr1G068770.1 | Barley | nucleus | 38.66 | 35.68 |
| TraesCS6B01G299600.1 | Wheat | nucleus | 38.66 | 35.37 |
| OQU78405 | Sorghum | nucleus | 34.84 | 34.27 |
| Zm00001d038964_P001 | Maize | nucleus | 34.61 | 34.12 |
| OQU85551 | Sorghum | cytosol, plastid | 36.75 | 34.0 |
| Zm00001d017768_P006 | Maize | cytosol | 38.19 | 33.68 |
| Zm00001d051562_P001 | Maize | plastid | 35.32 | 33.56 |
| KRH69884 | Soybean | nucleus | 43.44 | 25.14 |
Protein Annotations
| EnsemblPlants:CDY28989 | EnsemblPlantsGene:GSBRNA2T00041712001 | GO:A0A078GV24 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| PANTHER:PTHR35490 | ProteinID:CDY28989 | ProteinID:CDY28989.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0004EEFAFB |
| UniProt:A0A078GV24 | MapMan:35.2 | : | : | : | : |
Description
BnaC07g31950DBnaC07g31950D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GV24]
Coordinates
chrLK032229:+:65585..68018
Molecular Weight (calculated)
46688.3 Da
IEP (calculated)
4.944
GRAVY (calculated)
-0.723
Length
419 amino acids
Sequence
(BLAST)
(BLAST)
001: MPTFSAIALD RMIEPGASTS AETTVPSTNS QYYYSKPPIS KVDKAKSLNE RRRTFTRPKM SPALYATPDA IPLPNSPSSF PPSPYIINHK SRGPPRLLKS
101: SSEANVASQQ KTVEDEAADV KASPRRKSTS FSFPTEEDFG GVVDGPFGSW SGKSDLDSAA NGLERENNLP EPVFKAEKES ESEDFYDPGE SASFTSNAEV
201: EGDAGEDGSQ KLATTVGEFY DAWDELSTDS GMQTSANNIE SELREIRLSL LIEIEKRKQT EEALEQIQTH WLKLREQLAQ VGLFIPINPT TSTNNMNLSE
301: ELRCQLEVAR FVSDSLSRGM AKAEAEMVME SKLETKNFEI TRLSDRVHYY EAVNREMSQR NQEAIEVARR KRQKRKKRQR WIWGSIAATI TLGSAALAWS
401: YIPTASKPSS EVSQTLKDD
101: SSEANVASQQ KTVEDEAADV KASPRRKSTS FSFPTEEDFG GVVDGPFGSW SGKSDLDSAA NGLERENNLP EPVFKAEKES ESEDFYDPGE SASFTSNAEV
201: EGDAGEDGSQ KLATTVGEFY DAWDELSTDS GMQTSANNIE SELREIRLSL LIEIEKRKQT EEALEQIQTH WLKLREQLAQ VGLFIPINPT TSTNNMNLSE
301: ELRCQLEVAR FVSDSLSRGM AKAEAEMVME SKLETKNFEI TRLSDRVHYY EAVNREMSQR NQEAIEVARR KRQKRKKRQR WIWGSIAATI TLGSAALAWS
401: YIPTASKPSS EVSQTLKDD
001: MPTFSAIALD RMLEPGASTS VESVPSTTNL FYSKPPISKL EKGKGKLPNE RTVTRPLMSP ALYATPDAIP LPNSPSSFPP SPYIINHKSR GPPRLLKSSS
101: EANVVSSSHQ KTLEEETITA ETDVKVSPRR RSTSFSFPIT EVTEDDYSNG VHARTVGNYN FDGIVDGPVG NWSPLDGKSG NGKSELDNAA NGLERVNGLS
201: EPVPIKTDKE SESEDFYDPG ESASFTSNTD VEGDAGDESS QRLATPVGEF YDAWDELSTD SGMQSSVNNI ESELSEIRLS LLMEIEKRKQ TEEALEQMQI
301: HWQRLREQMA QVGLFVPIDP TASTNNMNLS EELRCQLEIA RFVSDSLGRG MAKAEVEMEM ESMLETKNFE ITRLSDRLHY YEAVNREMSQ RNQEAIEVAR
401: RERQKRKKRQ RWIWGSIAAT ITLGSAALAW SYIPAAKPSS EVSLKDE
101: EANVVSSSHQ KTLEEETITA ETDVKVSPRR RSTSFSFPIT EVTEDDYSNG VHARTVGNYN FDGIVDGPVG NWSPLDGKSG NGKSELDNAA NGLERVNGLS
201: EPVPIKTDKE SESEDFYDPG ESASFTSNTD VEGDAGDESS QRLATPVGEF YDAWDELSTD SGMQSSVNNI ESELSEIRLS LLMEIEKRKQ TEEALEQMQI
301: HWQRLREQMA QVGLFVPIDP TASTNNMNLS EELRCQLEIA RFVSDSLGRG MAKAEVEMEM ESMLETKNFE ITRLSDRLHY YEAVNREMSQ RNQEAIEVAR
401: RERQKRKKRQ RWIWGSIAAT ITLGSAALAW SYIPAAKPSS EVSLKDE
Arabidopsis Description
AT3g50910/F18B3_190 [Source:UniProtKB/TrEMBL;Acc:Q94BX2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.