CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX89333
CDX94330

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G51510.1	CDX89333	AT4G26455.1	21798944
AT3G51510.1	CDX94330	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra038904.1-P	Field mustard	plastid	100.0	100.0
CDY16301	Canola	plastid	98.25	98.25
CDX78010	Canola	plastid	85.38	78.49
CDX73716	Canola	plastid	84.8	77.96
VIT_04s0044g00320.t01	Wine grape	vacuole	40.35	75.82
AT3G51510.1	Thale cress	plastid	80.12	75.69
KRG94039	Soybean	cytosol	40.35	60.53
KRH67281	Soybean	plastid	58.48	56.5
GSMUA_Achr10P...	Banana	plastid	59.65	55.43
TraesCS1B01G319200.1	Wheat	plastid	50.88	51.18
TraesCS1D01G307900.1	Wheat	plastid	50.29	50.59
Os05t0490900-01	Rice	plastid	50.88	50.58
Zm00001d038542_P001	Maize	plastid	49.71	50.3
TraesCS1A01G308500.1	Wheat	plastid	49.12	49.12
HORVU1Hr1G068500.3	Barley	plastid	44.44	44.97
EES19726	Sorghum	plastid	47.37	44.75
Solyc02g068270.2.1	Tomato	extracellular, plastid	55.56	44.19
HORVU0Hr1G001170.1	Barley	plastid	49.71	43.59
KRG95603	Soybean	plastid	46.78	43.24

Protein Annotations

EnsemblPlants:CDY33273	EnsemblPlantsGene:GSBRNA2T00054043001	GO:A0A078H8U3	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
PANTHER:PTHR36042	ProteinID:CDY33273	ProteinID:CDY33273.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI00025451EA
UniProt:A0A078H8U3	MapMan:35.2	:	:	:	:

Description

BnaA01g19400DBnaA01g19400D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H8U3]

Coordinates

chrLK032310:-:78816..79974

Molecular Weight (calculated)

18693.8 Da

IEP (calculated)

6.785

GRAVY (calculated)

-0.266

Length

171 amino acids

Sequence
(BLAST)

001: MAASLPTTLC LSHGDESCKR SLTHGYALAV KRNLMGHSRN TVRRLVVTAA TEGSRKSKES QPSWANPDSD EPPPWARNEG PSSTSQESFE VPFYVYLLAS
101: AITAIAAIGS VFEYSSKNPV FGVLDSDSIF YTPVLGFFAF TGIPTSVFLW FKSVEAANKE AAEQDKRDGY R

Best Arabidopsis Sequence Match ( AT3G51510.1 )
(BLAST)

001: MAASLTSLPT GFCLSHGDEC CNRSPTKSPF PGHHPLAGRR KGHLLHYERS TVRRLVVTAA TEGSKKSKES EPSWANPDSD EPPPWARNEG RSSTSQESFE
101: VPFFVYLLAS AITAIAAIGS VFEYTSKNPV FGILESDSIF YTPVLGFFAL TGIPTSVFLW FKSVEAANKE AQEQDKRDGF L

Arabidopsis Description

AT3g51510/F26O13_150 [Source:UniProtKB/TrEMBL;Acc:Q9SCZ8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.