Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU2Hr1G081800.3 | |
| HORVU5Hr1G071910.1 | |
| HORVU7Hr1G048940.3 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G51510.1 | HORVU2Hr1G081800.3 | AT4G26455.1 | 21798944 |
| AT3G51510.1 | HORVU5Hr1G071910.1 | AT4G26455.1 | 21798944 |
| AT3G51510.1 | HORVU7Hr1G048940.3 | AT4G26455.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G307900.1 | Wheat | plastid | 76.41 | 87.65 |
| TraesCS1B01G319200.1 | Wheat | plastid | 75.38 | 86.47 |
| TraesCS1A01G308500.1 | Wheat | plastid | 73.33 | 83.63 |
| HORVU1Hr1G068500.3 | Barley | plastid | 69.74 | 80.47 |
| VIT_04s0044g00320.t01 | Wine grape | vacuole | 29.74 | 63.74 |
| Os05t0490900-01 | Rice | plastid | 51.28 | 58.14 |
| Zm00001d038542_P001 | Maize | plastid | 50.26 | 57.99 |
| EES19726 | Sorghum | plastid | 50.26 | 54.14 |
| KRG94039 | Soybean | cytosol | 30.77 | 52.63 |
| CDY33273 | Canola | plastid | 43.59 | 49.71 |
| CDY16301 | Canola | plastid | 43.59 | 49.71 |
| Bra038904.1-P | Field mustard | plastid | 43.59 | 49.71 |
| KRH67281 | Soybean | plastid | 43.08 | 47.46 |
| AT3G51510.1 | Thale cress | plastid | 43.59 | 46.96 |
| CDX73716 | Canola | plastid | 42.56 | 44.62 |
| CDX78010 | Canola | plastid | 42.05 | 44.09 |
| Bra036793.1-P | Field mustard | plastid | 42.05 | 44.09 |
| GSMUA_Achr10P... | Banana | plastid | 40.0 | 42.39 |
| Solyc02g068270.2.1 | Tomato | extracellular, plastid | 45.64 | 41.4 |
| KRG95603 | Soybean | plastid | 35.38 | 37.3 |
Protein Annotations
| EnsemblPlants:HORVU0Hr1G001170.1 | EnsemblPlantsGene:HORVU0Hr1G001170 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | PANTHER:PTHR36042 |
| SEG:seg | TMHMM:TMhelix | UniParc:UPI000B4728B4 | UniProt:A0A287DU44 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chrchrUn:+:6460894..6461918
Molecular Weight (calculated)
20583.3 Da
IEP (calculated)
9.435
GRAVY (calculated)
-0.200
Length
195 amino acids
Sequence
(BLAST)
(BLAST)
001: TLPCRPHTAL CSKLSHRERG LAIVSMAAAT ISLCGSRCVA PSRSPKARLN SQAAAAPYAR PSSSRPRAVV VAAKSSGEKA DEKVPSWARP GSDEPPPWAR
101: NEGGASGQEG DAAQVPFYAY LLASAVTAIA AVRSLFEYTN GRPVFGVVGT DSPLYAPILG FFAVTGIPTS GYLWYKAVQT ANKDAEEQDR RDGFL
101: NEGGASGQEG DAAQVPFYAY LLASAVTAIA AVRSLFEYTN GRPVFGVVGT DSPLYAPILG FFAVTGIPTS GYLWYKAVQT ANKDAEEQDR RDGFL
001: MAASLTSLPT GFCLSHGDEC CNRSPTKSPF PGHHPLAGRR KGHLLHYERS TVRRLVVTAA TEGSKKSKES EPSWANPDSD EPPPWARNEG RSSTSQESFE
101: VPFFVYLLAS AITAIAAIGS VFEYTSKNPV FGILESDSIF YTPVLGFFAL TGIPTSVFLW FKSVEAANKE AQEQDKRDGF L
101: VPFFVYLLAS AITAIAAIGS VFEYTSKNPV FGILESDSIF YTPVLGFFAL TGIPTSVFLW FKSVEAANKE AQEQDKRDGF L
Arabidopsis Description
AT3g51510/F26O13_150 [Source:UniProtKB/TrEMBL;Acc:Q9SCZ8]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.