CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX89333
CDX94330

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G51510.1	CDX89333	AT4G26455.1	21798944
AT3G51510.1	CDX94330	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra036793.1-P	Field mustard	plastid	100.0	100.0
CDX73716	Canola	plastid	90.86	90.86
CDY33273	Canola	plastid	78.49	85.38
CDY16301	Canola	plastid	77.96	84.8
AT3G51510.1	Thale cress	plastid	75.81	77.9
VIT_04s0044g00320.t01	Wine grape	vacuole	36.56	74.73
KRG94039	Soybean	cytosol	36.02	58.77
GSMUA_Achr10P...	Banana	plastid	55.38	55.98
KRH67281	Soybean	plastid	52.69	55.37
Os05t0490900-01	Rice	plastid	47.85	51.74
Zm00001d038542_P001	Maize	plastid	45.7	50.3
TraesCS1B01G319200.1	Wheat	plastid	45.16	49.41
TraesCS1D01G307900.1	Wheat	plastid	44.62	48.82
TraesCS1A01G308500.1	Wheat	plastid	43.01	46.78
EES19726	Sorghum	plastid	43.01	44.2
HORVU1Hr1G068500.3	Barley	plastid	39.25	43.2
KRG95603	Soybean	plastid	42.47	42.7
HORVU0Hr1G001170.1	Barley	plastid	44.09	42.05
Solyc02g068270.2.1	Tomato	extracellular, plastid	48.39	41.86

Protein Annotations

EnsemblPlants:CDX78010	EnsemblPlantsGene:GSBRNA2T00129283001	GO:A0A078CM82	PANTHER:PTHR36042	ProteinID:CDX78010	ProteinID:CDX78010.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI0002542CDF	MapMan:35.2	:	:

Description

BnaA09g32050D

Coordinates

chrLK031814:+:610938..611990

Molecular Weight (calculated)

20309.6 Da

IEP (calculated)

6.672

GRAVY (calculated)

-0.260

Length

186 amino acids

Sequence
(BLAST)

001: MATSLASLPT SFCLNHVDEC FKRSHTKPSL SSNHQVARRN LIGHSLHCYE PSSTVKRLVV TAATEGSRKS KESQPSWANP DSDEPPPWAR GEGGSSSSTS
101: QESFEVPFFV YLLASAITAI AAIGSVFEYS SKNPVFGVLE SDSIFYTPVL GFFAFTGIPT SVFLWFKSVE AANKEAAEQD KRDGYR

Best Arabidopsis Sequence Match ( AT3G51510.1 )
(BLAST)

001: MAASLTSLPT GFCLSHGDEC CNRSPTKSPF PGHHPLAGRR KGHLLHYERS TVRRLVVTAA TEGSKKSKES EPSWANPDSD EPPPWARNEG RSSTSQESFE
101: VPFFVYLLAS AITAIAAIGS VFEYTSKNPV FGILESDSIF YTPVLGFFAL TGIPTSVFLW FKSVEAANKE AQEQDKRDGF L

Arabidopsis Description

AT3g51510/F26O13_150 [Source:UniProtKB/TrEMBL;Acc:Q9SCZ8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.