CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
extracellular 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	extracellular
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX89333
CDX94330

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G51510.1	CDX89333	AT4G26455.1	21798944
AT3G51510.1	CDX94330	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY33273	Canola	plastid	98.25	98.25
CDX73716	Canola	plastid	84.8	77.96
CDX78010	Canola	plastid	84.8	77.96
VIT_04s0044g00320.t01	Wine grape	vacuole	40.35	75.82
AT3G51510.1	Thale cress	plastid	80.12	75.69
KRG94039	Soybean	cytosol	40.35	60.53
KRH67281	Soybean	plastid	57.89	55.93
GSMUA_Achr10P...	Banana	plastid	59.06	54.89
TraesCS1B01G319200.1	Wheat	plastid	50.88	51.18
Os05t0490900-01	Rice	plastid	51.46	51.16
TraesCS1D01G307900.1	Wheat	plastid	50.29	50.59
Zm00001d038542_P001	Maize	plastid	49.71	50.3
TraesCS1A01G308500.1	Wheat	plastid	49.12	49.12
EES19726	Sorghum	plastid	48.54	45.86
HORVU1Hr1G068500.3	Barley	plastid	44.44	44.97
Solyc02g068270.2.1	Tomato	extracellular, plastid	54.97	43.72
HORVU0Hr1G001170.1	Barley	plastid	49.71	43.59
KRG95603	Soybean	plastid	46.2	42.7

Protein Annotations

EnsemblPlants:CDY16301	EnsemblPlantsGene:GSBRNA2T00090804001	GO:A0A078FT68	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
PANTHER:PTHR36042	ProteinID:CDY16301	ProteinID:CDY16301.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EF22E7
UniProt:A0A078FT68	MapMan:35.2	:	:	:	:

Description

BnaC01g23360DBnaC01g23360D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FT68]

Coordinates

chrLK032062:-:538318..539658

Molecular Weight (calculated)

18678.8 Da

IEP (calculated)

6.524

GRAVY (calculated)

-0.304

Length

171 amino acids

Sequence
(BLAST)

001: MAASLPTTLC LSHGDESCKR SPTQGYALAV KRNLMGHSRN TVRRLVVTAA TEGSRKSKEP QPSWANPDSD EPPPWARNEG PSSTSQESFE VPFYVYLLAS
101: AITAIAAIGS VFEYSSKNPV FGVLDSDSIF YTPVLGFFAF TGIPTSVFLW FKSVEAANKE AAEQDKRDGY R

Best Arabidopsis Sequence Match ( AT3G51510.1 )
(BLAST)

001: MAASLTSLPT GFCLSHGDEC CNRSPTKSPF PGHHPLAGRR KGHLLHYERS TVRRLVVTAA TEGSKKSKES EPSWANPDSD EPPPWARNEG RSSTSQESFE
101: VPFFVYLLAS AITAIAAIGS VFEYTSKNPV FGILESDSIF YTPVLGFFAL TGIPTSVFLW FKSVEAANKE AQEQDKRDGF L

Arabidopsis Description

AT3g51510/F26O13_150 [Source:UniProtKB/TrEMBL;Acc:Q9SCZ8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.